 |
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300020193 Open in IMG/M |
| Scaffold ID | Ga0194131_10001711 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Lake Tanganyika, Tanzania - TA2015053 Kigoma Offshore 120m |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 37136 |
| Total Scaffold Genes | 54 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 39 (72.22%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (75.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Lake Tanganyika, Tanzania |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Tanzania: Lake Tanganyika | |||||||
| Coordinates | Lat. (o) | -4.8915 | Long. (o) | 29.586 | Alt. (m) | Depth (m) | 120 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F015703 | Metagenome / Metatranscriptome | 252 | Y |
| F041720 | Metagenome | 159 | Y |
| F048791 | Metagenome / Metatranscriptome | 147 | Y |
| F070878 | Metagenome / Metatranscriptome | 122 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0194131_1000171113 | F015703 | N/A | MVVEIEQNPGGKGWKPSGLMTTKARWWIYVFSPQAFVAVEVERLKKYLEINNKIEKKEFAKNSSNSTRGYLLFPEDVSKLLSSELYDVVHKS |
| Ga0194131_1000171126 | F041720 | AGGAG | MSRSARLFLSETQEAYLAWLLTPEDTRTPGTKKEWAELNDVHYNTLGVWEKNKIFKERWELGVKGMAQSPERTQALLDALYAKGISGDVKSAELYLKATGQMQQAQTVNINTSSVKELTDEELQAMIIEITQKKQPTINITKIEDEE |
| Ga0194131_1000171149 | F070878 | AGGAG | MATNNKFIVERTNVLAADVTVGATYAVLDNEDFGFYGKAGETYEFKARVVYSASAADKGAAFSVSAGAVPTSIHFISEYNTDATTVVRTACVAINTPDHGTASVAVATGFNTALVYGVITPSADGFIGVSGIAEEASTITAKGTLSTLSWKRVFVGDNE |
| Ga0194131_1000171151 | F048791 | AGGAG | MAINFSNANLTLAQMRTFVGELSDLDIGFDPNDDISTDLVNGFVKEGFQKIVALSQRYPYYQSTYGFSTIANQRSYTNFGRILPSVVSVNISDIQQIIAVVNNTDNGNALVYLDQARCESIWVGTSDQAEIPAYFSIWAGQLNLWPKPNDVYSITIRGFRVPSLTWFSDENLSIDIDPQMQLPLINYVMARIFQFQEDPEMAREYMSSFEKAVAIIQGQLTAPSSNRQLIMSGGLQLTPYDWWWSDTPNLRVLPGSPYPLGVAL |
| ⦗Top⦘ |
|
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |