NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0163147_10084961

Scaffold Ga0163147_10084961


Overview

Basic Information
Taxon OID3300020192 Open in IMG/M
Scaffold IDGa0163147_10084961 Open in IMG/M
Source Dataset NameFreshwater microbial mat bacterial communities from Lake Vanda, McMurdo Dry Valleys, Antarctica- Oligotrophic Lake LV.19.MP6.G1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2172
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Microbial Mat → Freshwater Microbial Mat Bacterial Communities From Lake Vanda, Mcmurdo Dry Valleys, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Lake Vanda, McMurdo Dry Valleys
CoordinatesLat. (o)-77.5281Long. (o)161.59Alt. (m)Depth (m)19
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F024483Metagenome / Metatranscriptome205Y
F027105Metagenome / Metatranscriptome195Y

Sequences

Protein IDFamilyRBSSequence
Ga0163147_100849611F027105N/AVLTVATDTDASSIFDLLHDDSEFDSLQLNSVVVSRVPEEVIAIDDLEEGEWTDEESVEDKAYENIQELKISEVATGLILTANRHEAHLDGGSQASTTNDKSVLWGSKSYTSKNPCRVRLMCVDGKSPIVPKGYGTVRIPVDNAEGYVPIKCYYTPDIPNFILSPNSFKSLLGKQHNGYALECDNDEKTFQFSVNHKKRKSGSLLLC
Ga0163147_100849614F024483AGGALKNVVWYNPLTDRVKYRYHVRFDKGFNDLLLSKLPPNVVLMDRREERVLAETLTIRIPPFTTSEHPFFHEDNVTVKVVCKSDLYGFELSEDDCMKRVCISGFRKDGKGTNGRKSCNTISSSERATRRKCCGAYITAIDDEEIVAMDQAKEKFAELQSKKVNSFTMILAREPKP

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