Scaffold Ga0163147

Basic Information
Taxon OID	3300020192 Open in IMG/M
Scaffold ID	Ga0163147_10069264 Open in IMG/M
Source Dataset Name	Freshwater microbial mat bacterial communities from Lake Vanda, McMurdo Dry Valleys, Antarctica- Oligotrophic Lake LV.19.MP6.G1
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300020192 Open in IMG/M

Scaffold ID

Source Dataset Name

Freshwater microbial mat bacterial communities from Lake Vanda, McMurdo Dry Valleys, Antarctica- Oligotrophic Lake LV.19.MP6.G1

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	2517
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (50.00%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (50.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

2517

Total Scaffold Genes

4 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

2 (50.00%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (50.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Microbial Mat → Freshwater Microbial Mat Bacterial Communities From Lake Vanda, Mcmurdo Dry Valleys, Antarctica

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Microbial Mat → Freshwater Microbial Mat Bacterial Communities From Lake Vanda, Mcmurdo Dry Valleys, Antarctica

Source Dataset Sampling Location
Location Name	Antarctica: Lake Vanda, McMurdo Dry Valleys
Coordinates	Lat. (^o)	-77.5281	Long. (^o)	161.59	Alt. (m)	Depth (m)	19
Location on Map

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Source Dataset Sampling Location

Location Name

Antarctica: Lake Vanda, McMurdo Dry Valleys

Coordinates

Lat. (^o)

-77.5281

Long. (^o)

161.59

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F023254	Metagenome / Metatranscriptome	210	Y
F036506	Metagenome / Metatranscriptome	169	Y
F079410	Metagenome / Metatranscriptome	115	Y
F098390	Metagenome / Metatranscriptome	103	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0163147_100692641	F098390	GAGG	VVSGPHSRTVKGDDIMVWKVRYEDGDREEMTASEIAYWKVPVEEVRASKPKSKSKPTRPKKKVATKPSGDPPKELEDALPKPGKDAVAPTHPRWSTHLQQQVLETVRMNFLDSNPCLPMDSIGMYEAATCRIHLCDNDPYEEMLHNVDEVETLLQDPVALAATLRLLDPDADLDELRVSALQSKAIVPKEHALPRFGRRALKRLSTWNLWHKNKLE
Ga0163147_100692642	F023254	N/A	VTVKVVCKSDLYGFELNEDDCMKRVYISGFKKDGKGTKGCKSCNTISSSERATRRKYCGAYITAIDDEEIVMLDQANEKFAELRGKKVDSFTMILAREPKPSKSMTLRAYDKLELPDFDLDNNLGEDYFASGDDLKGDSSMTTSQKMNEFGTDYVPTIGTKINKDFGSKGSLRAKWCRVPTVAL
Ga0163147_100692643	F079410	AGG	MLIGAGLPVKFWPYAFRHFLLIKNSALPRRNATESAHQKLHGEKDNPGLLRTFGCRLCVKILAWQNRAKYIQDTKKGIFLRHRTNTLKNVVWHDPLTDRVKYGYHVQFNEGFNNLPLSKLPPNVVLMDQREERVPAETLTIMILPFTTALRSILSSMKTM
Ga0163147_100692644	F036506	N/A	NGYTLECDDDKKTFRFSVNHKKRKGGSLLLHGATRGGMCYTRLAAPPMPMTEGTAEMSLDAADKTGISMIEDHLKNSYRHKLKLHALSAKAERLMWHQRLAHWGDEQLCRAHMFSDGVPEIVRSKDSALDSCPVCLAANMKSRNRGDGETRTATEPGQGLSLDFSFAAQHSKNATNPEQMRINDYMGIHGETYYLLVYDHVTERLDGACQQSKAPPIAWLKKWLTKNVKDDVKDQCVFMDQGGELHRSKAIRDLFEKEFGYEM

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0163147_10069264

Overview

Ecosystem & Geography

Associated Families

Sequences