NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0194118_10538081

Scaffold Ga0194118_10538081


Overview

Basic Information
Taxon OID3300020190 Open in IMG/M
Scaffold IDGa0194118_10538081 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Tanganyika, Tanzania - TA2015013 Mahale N5 surface
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)550
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Lake Tanganyika, Tanzania

Source Dataset Sampling Location
Location NameTanzania: Lake Tanganyika
CoordinatesLat. (o)-6.0012Long. (o)29.8102Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F087084Metagenome110N
F088747Metagenome109Y

Sequences

Protein IDFamilyRBSSequence
Ga0194118_105380811F087084N/ACADAIKLMVMAIRKEENDLIQEAVAYEAKAIQAVQEQTMQYMGDAVHTIRMVGVGLNGGGFYQWY
Ga0194118_105380812F088747AGGAMPIGLGAAILGGAGISAAGSLLGGLFGGKKPKVPELKPIDFAGEQRQAIQQNIASLAPATELARKTTEAEQSQLEAQLRRAIPGYDQLVAQAGQNIGAALRGEISPEVSAQV

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