NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0194118_10101828

Scaffold Ga0194118_10101828


Overview

Basic Information
Taxon OID3300020190 Open in IMG/M
Scaffold IDGa0194118_10101828 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Tanganyika, Tanzania - TA2015013 Mahale N5 surface
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1761
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Lake Tanganyika, Tanzania

Source Dataset Sampling Location
Location NameTanzania: Lake Tanganyika
CoordinatesLat. (o)-6.0012Long. (o)29.8102Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007855Metagenome / Metatranscriptome343N
F009126Metagenome / Metatranscriptome322N

Sequences

Protein IDFamilyRBSSequence
Ga0194118_101018281F009126N/AMAISVLSGSPQAATPVYNKMLFKVSGSLTSATNYRYVCDVKNAAGTTTLARLKCDKLPTTNFGFFDVSRVVETLIAPTVPTLTQAGFADHAGFYSGYRLAFMEEYGSTPVVYTGTPVNVSGNIAFAGNLEQLELADWSGGVYFPAALQQGDNPTALTTPTGRTVYGTDYGFLCAGQSGSSVI
Ga0194118_101018284F007855N/AKWWIPTVFTDELTAGQLIDLMDMNTTDERQLVQNLHRIMATLCREAGWFGWFPKKYDGSAHAERAELLKTHAKVGDVWGVVSFFLLSSESYLQILSDYSKHLTKTAQSL

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