Scaffold Ga0194118_10040695

Overview

Basic Information

• Taxon OID: 3300020190
• Scaffold ID: Ga0194118_10040695
• Source Dataset Name: Freshwater microbial communities from Lake Tanganyika, Tanzania - TA2015013 Mahale N5 surface
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3167
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (73.33%)
• Novel Protein Genes: 11
• Novel Protein Genes with Ribosome Binding Sites (RBS): 8 (72.73%)
• Associated Families: 1

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Lake Tanganyika, Tanzania

Source Dataset Sampling Location

• Location Name: Tanzania: Lake Tanganyika
• Coordinates
  • Lat. (^o): -6.0012
  • Long. (^o): 29.8102
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F072902	Metagenome	120	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0194118_100406951	F072902	N/A	TENQNAGTLERLYKQRIGELRKENIIREQRTNMLEP
Ga0194118_1004069510	F072902	N/A	MEXKYPKRTENQNAGTLELLYKQRVEEIXKENILR
Ga0194118_1004069511	F072902	AGG	MKGKYPKITENQNARTSELLYEQSIEEIXNENILREQRTKMLEP
Ga0194118_1004069513	F072902	AGGA	MKXKYHKRTENQNAGTLELLYKQKIEETXKENILR
Ga0194118_1004069515	F072902	AGGA	MKGKYHKRTENQNAGTLELLYKQRIEEIXKENILREQRT
Ga0194118_100406952	F072902	N/A	MKGKYIKRTENQHAGTLELLYEQRIEEIXKDNILREQRTKMLEP
Ga0194118_100406953	F072902	AGGA	MKRQYPKRTENQNAGTLELLYKQRIEEIXKETILREQRTNMLEP
Ga0194118_100406956	F072902	AGGA	MNGKYPKRTENQNAGTLELLYKHMIEDIXKENIIR
Ga0194118_100406957	F072902	AGGA	MKGKYHKRTENQNAGTLELLYTQRIEDIXKEYIIREQRTNMLEP
Ga0194118_100406958	F072902	AGGA	MKRKYHKRRENQNAGTLELLYKQRIGEIXKETILREQRTNMLEP
Ga0194118_100406959	F072902	AGGA	MKGNYLKRTENQHAGTLELLYKPKIEEIWNENILREQRTKMLEP