Scaffold Ga0194118_10026948

Overview

Basic Information

• Taxon OID: 3300020190
• Scaffold ID: Ga0194118_10026948
• Source Dataset Name: Freshwater microbial communities from Lake Tanganyika, Tanzania - TA2015013 Mahale N5 surface
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4172
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (62.50%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Lake Tanganyika, Tanzania

Source Dataset Sampling Location

• Location Name: Tanzania: Lake Tanganyika
• Coordinates
  • Lat. (^o): -6.0012
  • Long. (^o): 29.8102
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003687	Metagenome / Metatranscriptome	473	Y
F021097	Metagenome	220	Y
F034160	Metagenome / Metatranscriptome	175	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0194118_100269482	F034160	GGA	MDMKEGAFTAKAKRKGITSAQLQANVLANPDKYDEKTVKQARLRKTLVGLKKNKDNKQES
Ga0194118_100269487	F021097	N/A	MTKNGFVDACIAMTLGVGTGMVLSVLGQKALNQHYKKTCHERPGHNLIYTKGFLGDTYYCVNAKYMN
Ga0194118_100269488	F003687	AGGA	MTPKAVEHLLTQDARLLARRDAPVIDQELEEQRQAALKLFFQWQDGMREFQDLMSFCVVLQRKVDLNWDLLRWERRHED