Scaffold Ga0194118_10021531

Overview

Basic Information

• Taxon OID: 3300020190
• Scaffold ID: Ga0194118_10021531
• Source Dataset Name: Freshwater microbial communities from Lake Tanganyika, Tanzania - TA2015013 Mahale N5 surface
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4873
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (58.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Lake Tanganyika, Tanzania

Source Dataset Sampling Location

• Location Name: Tanzania: Lake Tanganyika
• Coordinates
  • Lat. (^o): -6.0012
  • Long. (^o): 29.8102
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008296	Metagenome	335	Y
F009064	Metagenome / Metatranscriptome	323	Y
F022871	Metagenome	212	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0194118_100215313	F009064	N/A	MTTEWIAISMIVNLTQEEVRVCTLLAVERWLIKFGSTDRPNYAQGKADGKLEPEINANIRANVCEWAVAKQYDLAWNTPWYPNGLHTKRHFISDVGNNVEVRSVRTQTSIPFWEKDKEKIIIGTKCLDTEYYSLVEIYGYIKPEDYMNDEYYDNYINGWRVPLTLFKEYSTRVI
Ga0194118_100215315	F008296	AGG	MSQEWIQDYDLLVSSLAAEYVKKYPMLEVEDIRQTLWMWFVTHPVKYKEWSKLPDKDKENLISKSLRNAAISYCEKEKSQTSGYELSDLYYYDSSVIEVFLPSIIGNSYEMPNKIQDLNFKFGKGEVTDGKNWLVIRSDIEKAYNKLTEAKQNILRLRFSADNYEWNDLAKELNTSADGARMKVKRAINSIIKYLGGWKTYPDTDIKEKEKNDERTEP
Ga0194118_100215317	F022871	AGGAG	MSESKNVWETDEIFWDFVKKNKHIVGFVISDEQGLDILNALRDIYLTIDEDSNSAKHMITLLAIVLHASSLGEGKQFTDEMQVLAAMEQFDSSMKEILDEEPR