Scaffold Ga0206130_10109755

Overview

Basic Information

• Taxon OID: 3300020187
• Scaffold ID: Ga0206130_10109755
• Source Dataset Name: Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160512_1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1583
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (57.14%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Pelagic → Unclassified → Seawater → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location

• Location Name: Atlantic Ocean: North Sea, Helgoland
• Coordinates
  • Lat. (^o): 54.1841
  • Long. (^o): 7.9
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003051	Metagenome / Metatranscriptome	510	Y
F015812	Metagenome / Metatranscriptome	252	Y
F067760	Metagenome / Metatranscriptome	125	N
F094102	Metagenome / Metatranscriptome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0206130_101097552	F094102	AGGAG	MIDGFLNPMNKEEFRMWEDYIISYNHNNPTDQIAYEVTWNDDNYKVKLLNLKVDNEG
Ga0206130_101097554	F003051	GGA	MNVKHLKTKVSIDMSVSEYDTLFKYINKIDSMLNTLHETNDLWLSDVHNLSSLRYELVELLDAEWNPDTYRYVKRKNN
Ga0206130_101097555	F067760	N/A	MKVRRIDMFIMRIYGDYCDEALRYNDLQKSFKQWKRDNIKELVKKYKEQRRLTR
Ga0206130_101097556	F015812	AGGAGG	MSKTLYKRLEDICAREYVVNKLSENKFRIFVDFLYDDIKTWDKPMSVSEVDVIHRIEEHISHMVSRILVDVHIGTTHD