NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0206130_10008064

Scaffold Ga0206130_10008064


Overview

Basic Information
Taxon OID3300020187 Open in IMG/M
Scaffold IDGa0206130_10008064 Open in IMG/M
Source Dataset NamePelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160512_1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)11443
Total Scaffold Genes16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (50.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Pelagic → Unclassified → Seawater → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location
Location NameAtlantic Ocean: North Sea, Helgoland
CoordinatesLat. (o)54.1841Long. (o)7.9Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F022459Metagenome / Metatranscriptome214Y
F033809Metagenome / Metatranscriptome176N
F077337Metagenome / Metatranscriptome117N

Sequences

Protein IDFamilyRBSSequence
Ga0206130_1000806411F022459N/AMNRQIEAQEEWQLATDYWVELTLEKYKGFDRDDLTQVFMRGPFAGWSERMVLELAVKMDDANTKVPRHKLT
Ga0206130_1000806413F033809AGGAGGMSEELKLETKDFITKKLRDAQESTGQNRAWCVREPKKWALVAQHIIQKPNGVSEFMRKNNITRNFYYDVQTELMADPESSEIRNAWASEISSVMFQGLDTYRQAQDQYSKLVESGEINIDGNELFKQGKSLQAFSDIHAKLTGNNIQRVVVEHKTTLDEAEEYAREMLKGIQEVEVVD
Ga0206130_100080644F077337N/AMRKILTDEELTALAAKMELRRQWLMSPAGRARRDEVMRQYMKKTYSGNKQSNGGVLNFAGCYDVFEQKEMEYECKATDGTDFVNPDYLKFKQKDFKERGLTGDWLN

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