Scaffold Ga0206131_10083544

Overview

Basic Information

• Taxon OID: 3300020185
• Scaffold ID: Ga0206131_10083544
• Source Dataset Name: Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160517_1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1913
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (14.29%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Pelagic → Unclassified → Seawater → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location

• Location Name: Atlantic Ocean: North Sea, Helgoland
• Coordinates
  • Lat. (^o): 54.1841
  • Long. (^o): 7.9
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F047385	Metagenome / Metatranscriptome	150	Y
F071009	Metagenome	122	N
F086945	Metagenome	110	N
F090089	Metagenome	108	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0206131_100835441	F086945	N/A	MSFDINEEITDCPFDWSSIDHRAIADGWYHFWGNTQITSFETDKKGKYVRDGDGKLIAHRTKISRKLPRTWFNKQQEGQE
Ga0206131_100835444	F071009	N/A	MTTDPENLPSLDDASLDALIQHYLSLKQRLTDNLRVRERLVELQDEQLKRQIESLGNYEPIGEDIKNQLNNQ
Ga0206131_100835445	F090089	N/A	MSVTYYLTDHNGQQIAFFYRIESERYNTVPNILWACRQYPQFQGTASSKGDFIEQAKRTLKEIKKLSVPVRKTCDVCDKSLQGRENEGTTCTDHNFNL
Ga0206131_100835446	F047385	N/A	MKIKQPSDNSLYVTIGNFTYYFDDSIDGENIVARWHLDDEETDTKEDLQIDNKLIVK