Scaffold Ga0206131_10078341

Overview

Basic Information

• Taxon OID: 3300020185
• Scaffold ID: Ga0206131_10078341
• Source Dataset Name: Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160517_1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2009
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (88.89%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Pelagic → Unclassified → Seawater → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location

• Location Name: Atlantic Ocean: North Sea, Helgoland
• Coordinates
  • Lat. (^o): 54.1841
  • Long. (^o): 7.9
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F055213	Metagenome	139	Y
F081232	Metagenome	114	Y
F095340	Metagenome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0206131_100783413	F081232	GGAG	MIQIGTLVRLKFKSVRYSKYDLRSEKIERDEDKPVGMVFGRGYKGMNGDLIVKWIKGNAEIGHPTGSIAYFDKYSVEKIA
Ga0206131_100783418	F055213	AGGA	MGMGTDKLGEIMSHYGNQMPQVGDLYVSETQGRLHILVSYEFVYKDRVDFYKYYKSKLKRLDDGAITSWTKPQHEFYRKYKPLQPDPQA
Ga0206131_100783419	F095340	GGAG	MNFHIGDLVKIEQGQGKNDIGIVLDYRSTGRFYPSTELTIKLSCGRTIRKDYKTVEKLGENND