NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0206131_10061014

Scaffold Ga0206131_10061014


Overview

Basic Information
Taxon OID3300020185 Open in IMG/M
Scaffold IDGa0206131_10061014 Open in IMG/M
Source Dataset NamePelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160517_1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2426
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (14.29%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Pelagic → Unclassified → Seawater → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location
Location NameAtlantic Ocean: North Sea, Helgoland
CoordinatesLat. (o)54.1841Long. (o)7.9Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007652Metagenome / Metatranscriptome347Y
F011718Metagenome288Y
F053639Metagenome141N
F088918Metagenome / Metatranscriptome109N
F099146Metagenome / Metatranscriptome103N

Sequences

Protein IDFamilyRBSSequence
Ga0206131_100610141F007652N/AMNEIIYPEVRTYYVCFDDERTEVKSYGWVEPNQVFQTIWIFDEFTNEEQWLAELLEWGIVPDINEEGELIL
Ga0206131_100610142F053639AGGMSLLRDTNNNLSSKRVAGYAVLSVVLFAFVGDLFEKLVINESVANTLIMSAAALLGIGTFERKN
Ga0206131_100610145F011718N/AMNWILNNDIVKHLLKTYLPYLIAFLMGVIVAWKGCGDTSGKPVTTIIEKPVPTIEYVDRWRTDTVRFVSKEFVTVRDTITSEIIVNRLDTLFLVDTVSIVEAWLTEIAKYDTTLNDFQITWQNYQNRSENLKVTYAPKKTPLKWALGIHANAGLISNFKSRYIPLMGVGLQGTVKKGYYGIDYGFNGDHYIGLRFGRNIISR
Ga0206131_100610146F099146N/AMRASTFICTNIEEIEMAKEENEKLNLPSPPPLPKPNYEESVGWFHIEDVTRAYTRNINNKAVASLVFSDGSYMDVKMTSEMEDMLDILFRNTL
Ga0206131_100610147F088918N/AYQKMQSRNQLWTREAFDQSEELAGQFKDNIIYMCEKKGVKVTEMVRWLNEMGLKFQIRRLYKWGEVHAIYPTLIEITFFSKYFEIDPGRMVSKDLRAVDRLKGISKENI
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