Scaffold Ga0206131_10052240

Overview

Basic Information

• Taxon OID: 3300020185
• Scaffold ID: Ga0206131_10052240
• Source Dataset Name: Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160517_1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2723
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (14.29%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Herelleviridae → unclassified Herelleviridae → Herelleviridae sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Pelagic → Unclassified → Seawater → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location

• Location Name: Atlantic Ocean: North Sea, Helgoland
• Coordinates
  • Lat. (^o): 54.1841
  • Long. (^o): 7.9
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F033811	Metagenome / Metatranscriptome	176	N
F054452	Metagenome / Metatranscriptome	140	N
F061389	Metagenome / Metatranscriptome	132	Y
F066285	Metagenome / Metatranscriptome	127	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0206131_100522402	F054452	N/A	MTDELKMSLLKELMFGLDVWNHEHHEEIMFLHDFGLVKVYDEDLQFTATTEEGVLELKRLIKLYFVFLN
Ga0206131_100522404	F066285	N/A	MDKKSWNVVYFNRPDVHKNLVWSDGKRYFDGFLGLDNSVYRKTSGTPVEEPNAVYWTEKPFNASDDQE
Ga0206131_100522405	F061389	N/A	MTPGTIFILKTHEEREDIEIFLCEDPDEEGKEFWLSRGFVLGEFESDYKPLCWTEDLFLI
Ga0206131_100522406	F033811	GGAG	MKLFCNIAVMETNIAQAFIEAIDYSHVKHIIRSNKSIKAHWGGVTPSIADLKRVIKNMWARVSKHESAEDCVNGIVMIKDGDRVRVDFLYLSYSSRMEESSQHSEEDCLQDSEREIKSS