NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0206131_10034834

Scaffold Ga0206131_10034834


Overview

Basic Information
Taxon OID3300020185 Open in IMG/M
Scaffold IDGa0206131_10034834 Open in IMG/M
Source Dataset NamePelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160517_1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3692
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (8.33%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Pelagic → Unclassified → Seawater → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location
Location NameAtlantic Ocean: North Sea, Helgoland
CoordinatesLat. (o)54.1841Long. (o)7.9Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007366Metagenome352N
F013089Metagenome274N
F020174Metagenome225Y
F023580Metagenome209N
F030437Metagenome / Metatranscriptome185N

Sequences

Protein IDFamilyRBSSequence
Ga0206131_1003483411F007366N/AMRGTPLKETKLGQWFKTKAPKVFDLIGEIVPGADALKAIGALIDNTDTSDEEKIEAKLLMEEIANADRANARNREIEITKSLGQRDWMQVFVGSAAMIIGIVMVVWAKTGVEDKEIFFHILGFAEGTLVGQVVNYYFGSAKK
Ga0206131_100348342F023580N/AMNNIKLFLIRNYGSTHNAAQTLDVTPNTVRNWCGRMPRNILKHLPEISETCGATYAEIVEEVLICEREGME
Ga0206131_100348344F013089N/AMGQSKIKTIQPSGTYDSQNGLMYKFEIQLESGDSGEVSAKSQDRWSVGDEVEFEVTPSKWGDRMKLTKPGFSPNQSKANNPDIQKRIDASWAIGLALKEESDPEKILEAAEFLLSIRATLISKL
Ga0206131_100348346F020174N/AMNEIKEDVFQYWTWAQEEFEGEDINRLMFEVDSAITNLNRYINNEFRRKAMGKTDMRSK
Ga0206131_100348348F030437N/AMIHNQEENWVTGKTHTRSASAYRKSIWTPVDEDDFYKNREKYIEAGWQSYCWTKGAEGYDKYFLSKLPKDEFEHLLMVEKKYGYFTLFYHIDED
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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