NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0206131_10031939

Scaffold Ga0206131_10031939


Overview

Basic Information
Taxon OID3300020185 Open in IMG/M
Scaffold IDGa0206131_10031939 Open in IMG/M
Source Dataset NamePelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160517_1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3937
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (91.67%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Pelagic → Unclassified → Seawater → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location
Location NameAtlantic Ocean: North Sea, Helgoland
CoordinatesLat. (o)54.1841Long. (o)7.9Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002221Metagenome581Y
F080492Metagenome115N
F092098Metagenome / Metatranscriptome107Y
F094536Metagenome106N
F099546Metagenome103N

Sequences

Protein IDFamilyRBSSequence
Ga0206131_1003193910F002221AGGMKTYLDKNLEGKLKELRTYELETYEKWGSRRRIFKMVGVQFEIKFCRGEQMLRESLESDAVRKKIQMVDMMHRAFVALNIKCEESGYIQIQPSTKCFNFNKKTALICDTDEQKPLLVKIHKDEPDMMIFSIEELLRCIPKDFMEAKQILSRLDKSVNFKRIDHG
Ga0206131_100319392F080492GGAGMSKLHHTEYKKNYKNYILECIENEDELIGKNLSDDEKINYLFERFYSEYGFLVERQGKHSAMTDWLSGLAIHIPYTYADIIELAVDMGSIDDNPSEALEDRVIENYFSFMANIILSFENKEVA
Ga0206131_100319393F092098AGGTGGMKITIDIDTGNSAFWYECEDSTQIFEHAEVERILKNIIPKIEITDHGKANDINGNKVATFTVERDKEEY
Ga0206131_100319396F094536AGGMRITVKDNLKDISKQLNKDLNQKEFNKIMARAMNYTGERTVNAERNSLENKLLNARPQTIKSVVISQFAKPQSNKLAMTVRVKDWAVKYLHYIYTGQSEPARRQGYPSPTTDGRHKKGKYGNIMKLSSKGGLLSKIDKTADSQRKGSRFQGVPKGEGSKAYGIWERQGKKGREGLKLLVAFTPFIQHRKFIDFYKVGEKAIKNNLHKEINKQFARHLKRR
Ga0206131_100319397F099546GAGMADKKQIDITKLKRQISKGKSLNEVSVSLGKSKSTILKLANENGLKFDNKSHWANL
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Biomedical Sciences Research Center "Alexander Fleming"
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