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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300020185 Open in IMG/M |
| Scaffold ID | Ga0206131_10029472 Open in IMG/M |
| Source Dataset Name | Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160517_1 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 4191 |
| Total Scaffold Genes | 15 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 9 (60.00%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (75.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Crocinitomicaceae → unclassified Crocinitomicaceae → Crocinitomicaceae bacterium TMED45 | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Pelagic → Unclassified → Seawater → Pelagic Marine Microbial Communities From North Sea |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Atlantic Ocean: North Sea, Helgoland | |||||||
| Coordinates | Lat. (o) | 54.1841 | Long. (o) | 7.9 | Alt. (m) | Depth (m) | 1 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F007770 | Metagenome | 345 | Y |
| F029710 | Metagenome / Metatranscriptome | 187 | Y |
| F048843 | Metagenome / Metatranscriptome | 147 | Y |
| F059455 | Metagenome | 134 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0206131_100294721 | F007770 | AGG | MSGEGLSVSFRRTQATTKSNGELLEEFQKIIYRSRVMKHMKWYGKDHSVDILEHGDDNRPKFQQEYVAIQDTFQFEISVYESWYKDGDLYESHEVEDSFVSLARKFANDNALMYFPDGFPAEWIEEEIIDGEKNWNHYNVKPDDKNIDKICNVWYRYGIMKLQAFDEKVESQLWAEARDRIKELMENKHECEYQR |
| Ga0206131_1002947211 | F059455 | GAGG | MNNLIEKEIVWSKGKTREEMAKQTFWSSSKDCSGLSGLEVKAYDFNVHVGCTAITSQGRSHNKYFQIPVDKIQEFCDALMQAKQLMESNNEKI |
| Ga0206131_1002947214 | F048843 | N/A | MSKITKKAKKEKYFVFSVPTAYIYEIQAETEKEAREILVEHGGIEIHGDQCEMLAEDYENAELEETYEM |
| Ga0206131_100294722 | F029710 | GGAG | MSVNIKGKDAKLGEEGLFSWLTIRQDLVGDDLSAPIMWLDDMSEDNLFPSDDLNIDWVEEMDKEGAPIIDGDHWGRDICIEVTCPSKNIEKRRAVGYNIDFDWN |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |