Scaffold Ga0206131_10027751

Overview

Basic Information

• Taxon OID: 3300020185
• Scaffold ID: Ga0206131_10027751
• Source Dataset Name: Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160517_1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4376
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (9.09%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Pelagic → Unclassified → Seawater → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location

• Location Name: Atlantic Ocean: North Sea, Helgoland
• Coordinates
  • Lat. (^o): 54.1841
  • Long. (^o): 7.9
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014147	Metagenome / Metatranscriptome	265	N
F051922	Metagenome / Metatranscriptome	143	N
F070126	Metagenome / Metatranscriptome	123	N
F080086	Metagenome / Metatranscriptome	115	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0206131_100277512	F070126	AGG	MNLTELYTYCREVIEKYPELRNDVMRHFALAEMECEDDCSSEEHECELSFTDINDLIADHEMQMGLQK
Ga0206131_100277515	F080086	N/A	MTNITAIEVSIEALEKECRAHDFKFMENPWRHRHWFNEYDRRAKIFTLLERLGHSSKAIEVYNTYAPDFAKRPLSSSYY
Ga0206131_100277516	F014147	N/A	MTTIKNTFERQLHEKFGVNVQSLDGTSSAILVDGTHGTDYISYHDTSPDWVFGIHPKLQAFIDAHGWECEWRNSEVLDLHPGHDWTSDFSEAQLVSYWNAMCDYITAPQDHVYANDDEAFEMLQLTIRQTVAASKNDRYNFDDKWLTLDGYGNPMSFNDIYQYIDVPELEEYLIAHALI
Ga0206131_100277517	F051922	N/A	MRTTLYSRLKPDVRARLEANQLDYEFTVGAVIAKLDSSLFWDELTVRDISNLVVFSDSDMPATTSTMLYGDTNLIEPQNEVI