NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0206131_10022523

Scaffold Ga0206131_10022523


Overview

Basic Information
Taxon OID3300020185 Open in IMG/M
Scaffold IDGa0206131_10022523 Open in IMG/M
Source Dataset NamePelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160517_1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5102
Total Scaffold Genes15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (46.67%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Pelagic → Unclassified → Seawater → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location
Location NameAtlantic Ocean: North Sea, Helgoland
CoordinatesLat. (o)54.1841Long. (o)7.9Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F015092Metagenome / Metatranscriptome257Y
F027515Metagenome / Metatranscriptome194Y
F049552Metagenome / Metatranscriptome146Y
F054772Metagenome / Metatranscriptome139Y
F057372Metagenome / Metatranscriptome136Y

Sequences

Protein IDFamilyRBSSequence
Ga0206131_1002252310F015092N/AMIEKIKSKLLTKLFIEWVSDEFDVELLEASKLMIQQRQDMVNTLSDKADPPKPIGFQIPTSELSSL
Ga0206131_1002252311F027515N/AMSEMSKFYEALAMVTSLTKEQQDRFISEVKDLQRSSVVNELNIGTVVRINHKKISPTDQFRVTKINRKNIKCQQVGTNVTYTVTPSLLEVIK
Ga0206131_1002252315F057372N/AMNKHELTDVLLEMVEHAGVELILEELITAMSQDELNENIKHLDQHLFENHFLTRED
Ga0206131_100225233F049552N/AMKDKNKEFWKVINMMDFNGRGYEAAGRWLVEDSGLTFSEIKEIRNMATRKVNVLYGKFRDDVRIGSDDGLDDVLWQTVANGFQSFHNCTAESLTEMYDENRYTESFAYSFHAVNSIEDEQFAANKFLKRERATKRIEEMRRFGGGFDQKLIAAFEHADNNNRRKLAVGFPELFEHLVD
Ga0206131_100225235F054772AGCAGMTTRNVIHYTDEYFELLDMVLDLKIDEATRNDLATKIFKAIAAGEQVAYEGRDGGNVNGVGKLVES
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Institute for Fundamental Biomedical Research
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