Scaffold Ga0206131_10013487

Overview

Basic Information

• Taxon OID: 3300020185
• Scaffold ID: Ga0206131_10013487
• Source Dataset Name: Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160517_1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7285
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (25.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Pelagic → Unclassified → Seawater → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location

• Location Name: Atlantic Ocean: North Sea, Helgoland
• Coordinates
  • Lat. (^o): 54.1841
  • Long. (^o): 7.9
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F061838	Metagenome / Metatranscriptome	131	N
F066233	Metagenome / Metatranscriptome	127	N
F068848	Metagenome / Metatranscriptome	124	N
F080617	Metagenome / Metatranscriptome	115	N
F099229	Metagenome / Metatranscriptome	103	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0206131_100134872	F080617	AGGA	MVDNKLKWSLEKLLNTVGRKLAMNYYGFDSEYEVVSIIDEKTGEEVTDFNFGDTENYTAIVKSKELLPEIFDVKIEPLFRYGKYAQPMDLQFNLENLTKYISPNQIAIQLVGPEWKPGENTYRTLQSFEDKWGRSLDRDANDFKVNPDAWIELNNGSVVDKLTGDSFPLMFNGLIDKTEVWNIARVDDDEWWGSLTDLDKERLTDNFS
Ga0206131_100134873	F099229	N/A	MDKDIDKIVEIGKVLLNTPTLKAIYKDKFEISTIDFEFVEKTSKSQFTTKYEHYIFKVTLYTNIPLNFDEEIKSGEIEGYDEIENEIWEYGIDPFYLADIIIPEQILNIILPKGKDARKVAIELSIIGDEGQVIWNDHMFGRPASSQFH
Ga0206131_100134874	F066233	N/A	MELENNLDGELKVEAQEKGKMAVKVLDALVFSKFGGIEYSMIIRKTIDNSYNPTAGSFYFEFNVDVDVDKTFQPSPTYDKKYEDFIYEIGEHIERALRYVNLHDYVTVPMFEYVNDELVENEIDRLENKLILYLQSQYEGLSYDSIREADIGYYFYKGESDNPYMRVEFIGQPPLRNGDRQSTDTIEEREYFSCEDLYDIMSDLFDRSPLSISYDGENFTCQ
Ga0206131_100134877	F061838	GGA	MSDMFNKVMPKSYDDFAKYSNMVMDHDVLDGKIKSIELDFEPSKEPIKYGNYEMIQPGTLVIDIILNTEGFYEISDSIPELKNVYELRPELEADSFLELNGYEFIKNIIFPYISQKFLRLMGLSLGDVPYVDFNLINHRGETILNYDEDLDTFIGSENSSVWRKIS
Ga0206131_100134878	F068848	N/A	MNMSDNKDMETQYGMLFKFMNQSRSKYMGLDLTYNFELLPENRISVDIFSEGKFDLPIRTKQMFRNMFMEFFVKDSKYFNIPKSTVGLLDFNNISLNGERLGDRITMDDNFKKDLVDVESKLKKYYSIDIADIPQGSFKLEAFDNDLKTYIEILDEDSLMYTVVIKDSQKITLNGNEFNKDTIIDFLDSVDLGEDNSFTSPTKSQPVRKMDPDSIFESISNAVWENSVEGDGTSLELFWDKLMSNGMNYQNHFMENMGMLSVVNLNSYDGMFNDNMHNYNTESQSEALSIFVGWLETNKGKYKL