Scaffold Ga0206131_10011520

Overview

Basic Information

• Taxon OID: 3300020185
• Scaffold ID: Ga0206131_10011520
• Source Dataset Name: Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160517_1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8137
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 16 (94.12%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Pelagic → Unclassified → Seawater → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location

• Location Name: Atlantic Ocean: North Sea, Helgoland
• Coordinates
  • Lat. (^o): 54.1841
  • Long. (^o): 7.9
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002858	Metagenome / Metatranscriptome	525	Y
F038216	Metagenome / Metatranscriptome	166	Y
F056585	Metagenome	137	N
F071124	Metagenome / Metatranscriptome	122	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0206131_1001152010	F056585	GGAG	MTKETWEMWADEYQEYYEDETPVYPDDMEEFKKDEQKVIDEVIRAIQGLSS
Ga0206131_1001152011	F071124	AGG	MTYAEYELGYYTGDSEDYSGPPEDPETQAMLEHLIEYETEMYRLNCKRRLSGCTYKQLKGLLINLHGEDWKDAL
Ga0206131_1001152014	F002858	AGGAGG	MSIDEKSIYVVDGGDYSIYCLGYTQARVVTNDIMRADPWGGIPFVLRKDLEFSLDDRGNVVMPRNTLDKILFLASDDFPEGEQ
Ga0206131_100115206	F038216	GAG	MTKQINYGTHETIKDSHRTLSDAVEMYAIYYSDYGDVLKEISQYQDSDEWTNAPNIDELPRYIELQKKQNAIVRELHAIGKELRSVGLDVDLGDHAKVDEYYDSLEVAA