Scaffold Ga0206131_10008536

Overview

Basic Information

• Taxon OID: 3300020185
• Scaffold ID: Ga0206131_10008536
• Source Dataset Name: Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160517_1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10033
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (17.65%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → environmental samples → uncultured virus (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Pelagic → Unclassified → Seawater → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location

• Location Name: Atlantic Ocean: North Sea, Helgoland
• Coordinates
  • Lat. (^o): 54.1841
  • Long. (^o): 7.9
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005218	Metagenome / Metatranscriptome	408	Y
F011860	Metagenome / Metatranscriptome	286	Y
F015999	Metagenome / Metatranscriptome	250	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0206131_100085364	F005218	N/A	MANDNFYGYKRNPKKRAKALDYKGVDMEFESVNPYEFKKGMYCELNKLGAASLRESDEEQREKATETILKNLKNVPAYYSYMEHYETTTRNMDRKPSFKTFLKELEGYSMKEVGEKFTVDKMKEIKLKENIRAEVRNKINELFKTK
Ga0206131_100085367	F015999	N/A	MSLNSFFDSIDTDTQFDVWRNSIRQKLIYLKNTIPLENRLELHYVGETLEFLDSLNVLSSDFLAHNPDAQSKTHLKQRFLICNSYYKKFGKR
Ga0206131_100085368	F011860	N/A	MARYKEQLNVAMERFDQGLARVHSLVKRGENAKALHFMENDLKDLYEELSNIINIEPSSHNTRIGTL