Scaffold Ga0206131_10007600

Overview

Basic Information

• Taxon OID: 3300020185
• Scaffold ID: Ga0206131_10007600
• Source Dataset Name: Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160517_1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10822
• Total Scaffold Genes: 28
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (3.57%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Pelagic → Unclassified → Seawater → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location

• Location Name: Atlantic Ocean: North Sea, Helgoland
• Coordinates
  • Lat. (^o): 54.1841
  • Long. (^o): 7.9
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000918	Metagenome / Metatranscriptome	834	Y
F008577	Metagenome / Metatranscriptome	331	Y
F021302	Metagenome / Metatranscriptome	219	Y
F065127	Metagenome / Metatranscriptome	128	Y
F078296	Metagenome / Metatranscriptome	116	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0206131_1000760014	F078296	N/A	MSKITKTFEDKSYSLSTGLTKDLGLFKVNATVWSHAIYNERKKAYDHEISDVEIAYYINDQYCKYQGFKELYEKLYGVDSFKKFEQDITYEFQEAYHDQTTLK
Ga0206131_1000760017	F065127	N/A	MHSKINAIHQRASNKAFAKVEMCQIIIQQDEHNLETKNYGADITLEQATLIAEGNKTELKVWQYIAELIEKSNKI
Ga0206131_1000760025	F021302	N/A	MRTLIQKLKKSRRKRKHVHLVQDRIAELNHEIIISSFKSEYSCNKNITVVKGNIENKAKLLKKYNRRLKLIIY
Ga0206131_100076004	F000918	N/A	MRYLTNNEAWDEVTNAFNESKRRTKICQSLFGQDNLIGLNDEQRDLFWETI
Ga0206131_100076009	F008577	N/A	MNLTWEEIKDIANLLDEIVGNHFHDAMYDIIFDRESDEEVEVTDEDVLAIKEQLKRIL