NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0206131_10007247

Scaffold Ga0206131_10007247


Overview

Basic Information
Taxon OID3300020185 Open in IMG/M
Scaffold IDGa0206131_10007247 Open in IMG/M
Source Dataset NamePelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160517_1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)11170
Total Scaffold Genes30 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (6.67%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families6

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Pelagic → Unclassified → Seawater → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location
Location NameAtlantic Ocean: North Sea, Helgoland
CoordinatesLat. (o)54.1841Long. (o)7.9Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001217Metagenome / Metatranscriptome745Y
F008577Metagenome / Metatranscriptome331Y
F017299Metagenome / Metatranscriptome241Y
F021302Metagenome / Metatranscriptome219Y
F067108Metagenome / Metatranscriptome126Y
F103885Metagenome / Metatranscriptome101Y

Sequences

Protein IDFamilyRBSSequence
Ga0206131_1000724712F103885N/AMATLLEKIKPRYRKSIEDSQYTYSSSRIIAKLESSTFYGELTITEIRDIYDMCGINALRVSAWDYRFGDNILTEND
Ga0206131_1000724717F017299N/AMSEQQPLKITLNYYNKEISTQVDHSDVKLEELHELWIEIVRAMGYHPKTIKDFYEE
Ga0206131_1000724721F021302N/AMRRLIQRYRHKQRKAKHVRFLSNRITYLHNEIVKASFKSEYSSNKNITITSGNIEVKARLLSKYNRRLKLVKL
Ga0206131_100072475F008577N/AMKLTWEEIKEIANRLDEIVGKNFHDAMYNVIWEREGTREVEVSDEDILQIKEQLKRIL
Ga0206131_100072478F067108N/AMSKKIIKVNENVDFSVFTKFTKDLGLFQVNASVWSMVSQDCTHSHDISDIELGFSINNKPCKYLGFQELYEKLYGKSTFNQFRADLTTEFEEAYFKQSPYKNK
Ga0206131_100072479F001217N/AMSATKFNGFEKYFIQTALKHAIEQAELDVLAAESDGKRSIYAPGYFSMVGNEIIHKVNRMTLKRYQD
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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