Scaffold Ga0206131_10006684

Overview

Basic Information

• Taxon OID: 3300020185
• Scaffold ID: Ga0206131_10006684
• Source Dataset Name: Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160517_1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 11747
• Total Scaffold Genes: 23
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 23 (100.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Pelagic → Unclassified → Seawater → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location

• Location Name: Atlantic Ocean: North Sea, Helgoland
• Coordinates
  • Lat. (^o): 54.1841
  • Long. (^o): 7.9
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F037491	Metagenome	168	Y
F062713	Metagenome	130	Y
F070058	Metagenome	123	Y
F100034	Metagenome	103	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0206131_1000668410	F037491	AGGAG	MHFTENRVAQYFIDAVLKDPDKSITVCGEGEYADVEKSREHFTVLDNMGECDFDDVGVWSDEREDYVAWFQFVYGNVTSNSEPMEVINDYTANEYGDNIIKRVEWCTE
Ga0206131_1000668411	F100034	GAG	VYRMNDLLTDRDDLVEFRRTINKLRSMIEYDVINHPHSTEFEELEVMLNEVVVHLDSMHDKLKEHVYAYDVAVLVKRRVYVKGSDETDTEQAAIDYAVSELDCTIDWDEDVLTLERREDEETTTVFDVEV
Ga0206131_1000668412	F070058	GGAGG	MAMDTWFIVQKFNRKTWEWEERDDDGSSWNSTLSNAKYFCDRHIADGEECRVVKEEVVYAPDA
Ga0206131_100066844	F062713	GAGG	MMIQYFDKQADREWLGIVPEFFGRGVVAARFQGGGIATVADEMNETYGMGGFADHWQGDIDDDGVYHAPEGAQLEPYARVDFNGWTMWAYSYSIFGIKDSVGNQRVGRFD