Scaffold Ga0206131

Basic Information
Taxon OID	3300020185 Open in IMG/M
Scaffold ID	Ga0206131_10006186 Open in IMG/M
Source Dataset Name	Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160517_1
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300020185 Open in IMG/M

Scaffold ID

Ga0206131_10006186 Open in IMG/M

Source Dataset Name

Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160517_1

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	12333
Total Scaffold Genes	21 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	14 (66.67%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (66.67%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

12333

Total Scaffold Genes

21 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

14 (66.67%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (66.67%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Pelagic → Unclassified → Seawater → Pelagic Marine Microbial Communities From North Sea

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Pelagic → Unclassified → Seawater → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location
Location Name	Atlantic Ocean: North Sea, Helgoland
Coordinates	Lat. (^o)	54.1841	Long. (^o)	7.9	Alt. (m)	Depth (m)	1
Location on Map

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Source Dataset Sampling Location

Location Name

Atlantic Ocean: North Sea, Helgoland

Coordinates

Lat. (^o)

54.1841

Long. (^o)

7.9

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001582	Metagenome / Metatranscriptome	668	Y
F002221	Metagenome	581	Y
F002716	Metagenome / Metatranscriptome	535	Y
F004956	Metagenome / Metatranscriptome	417	Y
F005495	Metagenome / Metatranscriptome	399	Y
F013639	Metagenome / Metatranscriptome	269	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0206131_1000618616	F013639	GAG	MKIDKQKLKEKIEQGKSSHDIAMTYDVHPSTIRRKAKQLGLKFETQSCWRKK
Ga0206131_1000618621	F002221	N/A	ETYVKWGNRKRIFKMIGVPFEIKFCRAEQMLKDSMINDSKQKQLSMVEMMLRAYEQLNIKCEESGYIQIQPNAKCFNFDNKTALVCDTDSDKPVLEKIHKDEKDIMIFSIEELFRCIPKDFMRAKELLSKLDKSVNIQKVDYV
Ga0206131_100061865	F004956	AGGAG	MKMISPDGKVLIDAHPSKVESLLNMGWKEEAVHSQDKIKPSSKKKSKDEVENGNT
Ga0206131_100061867	F002716	GAGG	MSQFRLETEEDMLGYLDINFGHGVSAVYTNSGTSTTINVILNNEYVEQEEGIGVEALKPIAYCRTIDVPNISFGNTLNVSAIKDTNGNILKAAQNYTVVNIQADRTGFSALMLEEI
Ga0206131_100061868	F001582	GAG	MPLESALDFNAYVDTTTGHGVTATFFEVQQSLWDDFPLIDTLFDIDSGFSKNINIIIDQEYFNIEGGTVPVAGYQPRAIVKASDVPYISQEDKLLVDAITTNRGNVLKPATTFIVRTVEPDNTGLVSLVLEEE
Ga0206131_100061869	F005495	N/A	MLKWNGGGNTPTLNMKKYKILQDTMAGGSKVHAGDIVELNEVEGHSLCAYHKAEIHVAKPKAKKEDRSVGLETSKVKAPKTRAKK

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0206131_10006186

Overview

Ecosystem & Geography

Associated Families

Sequences