Scaffold Ga0206131

Basic Information
Taxon OID	3300020185 Open in IMG/M
Scaffold ID	Ga0206131_10005870 Open in IMG/M
Source Dataset Name	Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160517_1
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300020185 Open in IMG/M

Scaffold ID

Ga0206131_10005870 Open in IMG/M

Source Dataset Name

Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160517_1

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	12737
Total Scaffold Genes	30 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	4 (13.33%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (14.29%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

12737

Total Scaffold Genes

30 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

4 (13.33%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (14.29%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Pelagic → Unclassified → Seawater → Pelagic Marine Microbial Communities From North Sea

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Pelagic → Unclassified → Seawater → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location
Location Name	Atlantic Ocean: North Sea, Helgoland
Coordinates	Lat. (^o)	54.1841	Long. (^o)	7.9	Alt. (m)	Depth (m)	1
Location on Map

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Source Dataset Sampling Location

Location Name

Atlantic Ocean: North Sea, Helgoland

Coordinates

Lat. (^o)

54.1841

Long. (^o)

7.9

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008782	Metagenome / Metatranscriptome	328	Y
F009300	Metagenome	320	Y
F014804	Metagenome	260	Y
F018080	Metagenome	237	Y
F024889	Metagenome	204	Y
F025613	Metagenome	201	Y
F063168	Metagenome	130	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0206131_100058701	F063168	N/A	MDTHVNKDPLNPINYEPTKNYCIICNIEESKTYFIDDSEICEDCFYSCCGDELNQDIRICKSCGEHN
Ga0206131_1000587011	F024889	N/A	MNSVTIGALMIVGVVVLYIFALCYVEGKIAKQENERLENNIDKLDDKA
Ga0206131_1000587015	F009300	N/A	MIKWKKTTYPSTFIKLSDELAKVRSMLSADVYNKNTEKYRGKQEHSISQLGIFAELIARHLMENNNGIKYKAALLLESRPVVEADLIMQGIGETHYIDVKGVRSGGNTLRVNFKAHNNPKKKITHYLFIQPLNALYARFCWFTHEQVSEWTVVMSTYTECYELEIQKHN
Ga0206131_1000587019	F018080	N/A	MEYLDIEIFNHFLKSYTYIIWNKKHLLGEIVEDNILKLLDEIQLIDFYHFDKTKFKVEKSKVEKYINRDDK
Ga0206131_100058702	F025613	N/A	MNKYKITNLRSNKNYFLNEKEKANFFIKNKLQNYNETNLTEQRRIRINKMLDNIAIVCFFGATILSIILIIEKYY
Ga0206131_1000587020	F014804	GAG	MNDDWIDNILDGEPSGITHTQWLIIESNIDQTSFTERMKSDILSRINDLTELEAEEIITKIYENRYEKDTRKQWEKMCKDGVFGHRDF
Ga0206131_100058709	F008782	N/A	MKKPIFRVFVSYQIKSKKVVTRKVITGILDTFVLTSNIKEIENDQELIDRICYINKKNLNKVDVIITSIDIENQYGETTDRFEDEY

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0206131_10005870

Overview

Ecosystem & Geography

Associated Families

Sequences