Scaffold Ga0206131_10005567

Overview

Basic Information

• Taxon OID: 3300020185
• Scaffold ID: Ga0206131_10005567
• Source Dataset Name: Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160517_1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 13233
• Total Scaffold Genes: 21
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Pelagic → Unclassified → Seawater → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location

• Location Name: Atlantic Ocean: North Sea, Helgoland
• Coordinates
  • Lat. (^o): 54.1841
  • Long. (^o): 7.9
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F020796	Metagenome / Metatranscriptome	222	Y
F067737	Metagenome / Metatranscriptome	125	N
F069992	Metagenome	123	Y
F097122	Metagenome	104	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0206131_1000556710	F069992	N/A	MYTLKINSNLSIKLLTTNKGFICYNLTDDKTQIDSFVLTDDLFRYKNRFESFKAISCIKKQFNTITF
Ga0206131_1000556718	F067737	N/A	MEGENLKLALKEVGKLIKKNLKQAAKDDKFSASGDLDRSFKYRVEDNELYIFGKQYANALSDGIKNKGKYGYKMADELAEWAKSKGMRPLFRNKKGQFRKVYESSWKSLGFVLARSIAGKSNAENPKNKEGGISKRFGYKGSGFIQAVQEQTKEQIKTILKEGYRKDILLSLNKLKSIN
Ga0206131_1000556721	F020796	N/A	MIRETLELLRNNEWLIEDKDVNIAKGLYEMPSNFRELRTNIKRKKLTNGK
Ga0206131_100055674	F097122	N/A	MKEQLKDKILSIRPEYSTEGFSSNPLPNEVSIYYEGEDFTIDLFLDINDVLRIDILEGEDAYDLSDEDITFLCGYLSGLLEYEIQITKNYYDAERGQQDNYYYYS