Scaffold Ga0206131_10004967

Overview

Basic Information

• Taxon OID: 3300020185
• Scaffold ID: Ga0206131_10004967
• Source Dataset Name: Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160517_1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 14287
• Total Scaffold Genes: 29
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 28 (96.55%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Pelagic → Unclassified → Seawater → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location

• Location Name: Atlantic Ocean: North Sea, Helgoland
• Coordinates
  • Lat. (^o): 54.1841
  • Long. (^o): 7.9
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F016899	Metagenome / Metatranscriptome	244	N
F017221	Metagenome / Metatranscriptome	242	Y
F019812	Metagenome / Metatranscriptome	227	Y
F074739	Metagenome / Metatranscriptome	119	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0206131_1000496710	F017221	GGAG	MDYIKNDYELQQLALSIALEAIEEVKQHGGDHYEFIDQSAAGSEHAIYTYKAIMLCANCCTDDAEAMLDDNSYRFDSFAHHACVLAEVTIQNAALQQFYELGGEVAA
Ga0206131_1000496715	F074739	GAG	MNVFTGPNDLLHGDEHLEELEDWELRERFFNALRDLTEAADTVEKLKSPKWTPYPEDIEYMEDTLEELKYSLK
Ga0206131_1000496716	F016899	AGGA	MFKEYMMSGTMNPEVQAVFKAAADISNGVFSLQEAAKFYKVPAPIIVQFIAESSEYDMVFSKVGDYDSNN
Ga0206131_100049679	F019812	GGAG	MDNQRQIEINRAHAYLMQKELDRELNRINRVYYCTLTLAAVTIWGSLIIYINSIWSV