Scaffold Ga0206131

Basic Information
Taxon OID	3300020185 Open in IMG/M
Scaffold ID	Ga0206131_10003321 Open in IMG/M
Source Dataset Name	Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160517_1
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300020185 Open in IMG/M

Scaffold ID

Ga0206131_10003321 Open in IMG/M

Source Dataset Name

Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160517_1

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	18665
Total Scaffold Genes	37 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	30 (81.08%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	6 (85.71%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

18665

Total Scaffold Genes

37 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

30 (81.08%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

6 (85.71%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Pelagic → Unclassified → Seawater → Pelagic Marine Microbial Communities From North Sea

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Pelagic → Unclassified → Seawater → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location
Location Name	Atlantic Ocean: North Sea, Helgoland
Coordinates	Lat. (^o)	54.1841	Long. (^o)	7.9	Alt. (m)	Depth (m)	1
Location on Map

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Source Dataset Sampling Location

Location Name

Atlantic Ocean: North Sea, Helgoland

Coordinates

Lat. (^o)

54.1841

Long. (^o)

7.9

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001582	Metagenome / Metatranscriptome	668	Y
F004956	Metagenome / Metatranscriptome	417	Y
F005495	Metagenome / Metatranscriptome	399	Y
F008346	Metagenome	335	Y
F022084	Metagenome	216	Y
F088799	Metagenome / Metatranscriptome	109	N
F099546	Metagenome	103	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0206131_1000332121	F022084	AGGAG	MNHKNYAKELFKLIEGKGYIIECESEHEPISKDDVLKHQVDDATIYILDKDKIDIGWIYWTFWNDWDESISDYTSDLDKILNLDGFIKNYTYMTN
Ga0206131_1000332127	F005495	N/A	MLKWNGGGNTPTLNMKKYLITSDTIADGKRVNVGDVVELPENIGRELCGYNKAEVHVAKPKAKKEDRSVGLKTSKVKAPKTRAKK
Ga0206131_1000332128	F001582	GAG	MPLESALDFNAYVDTTTGHGVKATFFETQSTLWDARTGFIDSWYDIDTGDAYGVDIIIDQEYFNIGGGTVDVDGFQPRAVMKSTDAKYISHGDKLLVEAITTNKGNTLVPETMFIVKTVEPDNTGLLSLVLEEE
Ga0206131_1000332129	F088799	GAGG	MSQFMLETEEDMLGYLDTEYGHGIDAVYIRNGTSSDIKIILDNEYVEQDLGVGVEALKPMATCRSIDIPNVSYGDVLNASAVKDTNGNILKAAQNYTIVNVQKDRTGFTVLMLEEI
Ga0206131_1000332131	F004956	AGGAG	MKLISPNGKMSMEVPQSNVETMLGMGWKEEAVQSKDKIKSSSKKKPKGEVKENVNI
Ga0206131_100033214	F008346	AGG	MPIKLKKSQTIRGKATGKFVTEHYYLKSMTIQELNDYIESSSAKKKIIQKCKNEIARRNK
Ga0206131_100033217	F099546	GAG	MADKKQIDITKLKRQIDKGKSLNEVSVSLGKSKSTILKLANENGLKFDNKSHWANL

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0206131_10003321

Overview

Ecosystem & Geography

Associated Families

Sequences