Scaffold Ga0206131_10001879

Overview

Basic Information

• Taxon OID: 3300020185
• Scaffold ID: Ga0206131_10001879
• Source Dataset Name: Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160517_1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 26316
• Total Scaffold Genes: 55
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 33 (60.00%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (62.50%)
• Associated Families: 8

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Pelagic → Unclassified → Seawater → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location

• Location Name: Atlantic Ocean: North Sea, Helgoland
• Coordinates
  • Lat. (^o): 54.1841
  • Long. (^o): 7.9
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008684	Metagenome	329	Y
F012834	Metagenome	277	Y
F015946	Metagenome	251	Y
F027349	Metagenome	195	N
F043684	Metagenome	156	N
F047023	Metagenome	150	N
F048298	Metagenome	148	Y
F084262	Metagenome / Metatranscriptome	112	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0206131_1000187913	F047023	N/A	MNNIKFTNEVLNKIYSELAIGNGIKTILKDLNLSWEGFRKLCHKKPKVRQEYELAKQDGVDYLLSESQTELKNMIEDFKANGKGDLATSHLLKEAVALTKWKASKLLPKYNDNAQKISLANADGQPLVVKWSKD
Ga0206131_1000187917	F015946	AGG	MTKYKIVDWMNNRIFPDKIFKSFEHGWEYIYSKFDNNEDHQEYYVVDVNQKERVSNDY
Ga0206131_1000187918	F008684	AGG	MIINNDNFDMACQLADDIYFKFIDSLDNKKASEFVVPDKDNIGSTKNTEKGSELYWDIENTIKNTLDNRKV
Ga0206131_1000187919	F084262	AGG	MYIIDYPNQRIKKFSNNELEDFLNTIVKKRWIFIKDKNKAKKFINQVSLNRKGNK
Ga0206131_1000187920	F048298	GAG	MNKQFLFWREVNKRVREECTIEAKDLDEATKLHNEGYCDYVEVDTLDEDEILDEGTTESEVK
Ga0206131_1000187922	F027349	GAGG	MKVWNIRVTDRNGFDSYSFFQEDEPTNQQLEVIKNIYQNSGRYIPEDIEDIDVEIKGSFDNQNIPTYDQLIDNLKNKYEVKK
Ga0206131_1000187927	F043684	N/A	MTIESVELKWEEIFSGAFTGLLRQSESMRNNIKWGHGAKFSIYEEWGRSISGTICEMALSKKMQSYFSHSVNNYFGKDLIINNKPVQVRSQLHSKQNKSLIIRKPFNHEDYYFLVGDDTPKYYFYGYILARDVSLVGNWTNFNNDNRPYVWSVPFDKLKPIDQFQYEK
Ga0206131_1000187928	F012834	N/A	MNSERFTDTAWTTGNFNKATISPSQTALNNWTYFLKYQLIPHLKFKPEKPSISFKTGTFVHEWFQNILMGNAKIEDVEKHFKTHIEQFKFSEKHRMKSLFLLKNIKGYVQRHLDAIKEISTWGEGWGIEKPFSDWYDNKYLGQTLNIANEGFIDCYNDDLEIITEHKNRFGSAKLSPLKKEPKKNVKPNENRIGDWTYTKSQKINKPQFTHCIQVAVYSKHYNYKYQPYLIYVGDSDYTIFTKDNCWELSNSGLEYFFEKFIQINIQRQEMLRIANGDIRKLAIMIGVDWSEIRNYKNNFLLENYHEEDMYKLETFYEQL