Scaffold Ga0206131

Basic Information
Taxon OID	3300020185 Open in IMG/M
Scaffold ID	Ga0206131_10001666 Open in IMG/M
Source Dataset Name	Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160517_1
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300020185 Open in IMG/M

Scaffold ID

Ga0206131_10001666 Open in IMG/M

Source Dataset Name

Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160517_1

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	28264
Total Scaffold Genes	42 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	29 (69.05%)
Novel Protein Genes	9 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	7 (77.78%)
Associated Families	9

Scaffold Components

Scaffold Length (bps)

28264

Total Scaffold Genes

42 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

29 (69.05%)

Novel Protein Genes

9 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

7 (77.78%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Pelagic → Unclassified → Seawater → Pelagic Marine Microbial Communities From North Sea

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Pelagic → Unclassified → Seawater → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location
Location Name	Atlantic Ocean: North Sea, Helgoland
Coordinates	Lat. (^o)	54.1841	Long. (^o)	7.9	Alt. (m)	Depth (m)	1
Location on Map

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Source Dataset Sampling Location

Location Name

Atlantic Ocean: North Sea, Helgoland

Coordinates

Lat. (^o)

54.1841

Long. (^o)

7.9

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001582	Metagenome / Metatranscriptome	668	Y
F002221	Metagenome	581	Y
F004956	Metagenome / Metatranscriptome	417	Y
F006845	Metagenome / Metatranscriptome	363	Y
F013088	Metagenome / Metatranscriptome	274	Y
F038657	Metagenome / Metatranscriptome	165	N
F063662	Metagenome	129	N
F088799	Metagenome / Metatranscriptome	109	N
F093807	Metagenome	106	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0206131_1000166616	F004956	AGGAG	MKLISPNGKNSVIAQPSKVESFKNMGWKEEAIQSQDKIKPSSKKKSKDEVKENGDT
Ga0206131_1000166618	F088799	GAGG	MSQYMLETEEDMLAYFDVDFGHAIAATYIRSGVSTAIKIILNREYVEQDAGIGVEATKPIAYCRSIDVPNVSQGDLLNASATTTVEGDILKAAQNYTIIDVQKDRTGLTALMLEET
Ga0206131_1000166619	F001582	N/A	MPIESSADFNSYVDPNAHGVSATFFETQTTLWDARTGLIDTWFDIDTGDAYPINIIIDQEYFSIASGTVPVDGYQPRAIIKATDAPYINHGDKIQVNAITTNNGNTLVPQTLFLIKTVMPDNTGLIEVVLEEQ
Ga0206131_1000166629	F002221	AGG	MKTYLDETLETKLKELRIYESETYEKWGNRKRIFKMVGVKFEIKFCRAEIMLKDILHDAHTKKKLQMVEMMLRAFDSLNIKCEESGYTMIQPSSRCFNFDKKTAIVCDTDDEKPILIKIHKNEPDMMIFSVEELLRCIPKDFMEAKQLLSKLDKSVNFKIIDHV
Ga0206131_1000166631	F038657	GGAG	MSILGGMGNTENKQQIYLGFKTMGQKFFANGETEVDVKYLQLDPETFKSGWGRYTKADGFEYKWDAKFGSVEPKPADDWKRAFSCWVMPHGAEHAYLWQRFTYAESSAFDSILDLFWNQRPRAAGMLPVVEFTGSKIIQVGMGSSSELSFKFSKWADRFDGNNIPEWYIDPNAPADDDDGFVSPNEGLADKVAEMVAKTELTDDDIPF
Ga0206131_1000166632	F006845	AGG	MDLHSYLLQEDFEEFCRESYRKIQVACEFLGIINDEDYEGFKERCYTQLETDYINSIENLTIH
Ga0206131_1000166634	F093807	N/A	MKQRGVMTQYKDLVETQRLKLNKEKDEWYIHVNNGAGYTEVKNGDTLTKTYHDTGRQEIIIDAN
Ga0206131_1000166635	F013088	AGGAG	MDELIKKALWIPEELHKDIKIFAIQNSLTIEQATQMLIKLGMVTYEAERGYDSV
Ga0206131_1000166637	F063662	AGGAG	METNEVVFNIVGAGQIRLPKREIRGYYKDFITGDTLVQVGDSEHKVRESLTEIAYLMGVV

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0206131_10001666

Overview

Ecosystem & Geography

Associated Families

Sequences