Scaffold Ga0206131

Basic Information
Taxon OID	3300020185 Open in IMG/M
Scaffold ID	Ga0206131_10001418 Open in IMG/M
Source Dataset Name	Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160517_1
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300020185 Open in IMG/M

Scaffold ID

Ga0206131_10001418 Open in IMG/M

Source Dataset Name

Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160517_1

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	30921
Total Scaffold Genes	48 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	42 (87.50%)
Novel Protein Genes	9 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	9 (100.00%)
Associated Families	9

Scaffold Components

Scaffold Length (bps)

30921

Total Scaffold Genes

48 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

42 (87.50%)

Novel Protein Genes

9 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

9 (100.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Pelagic → Unclassified → Seawater → Pelagic Marine Microbial Communities From North Sea

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Pelagic → Unclassified → Seawater → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location
Location Name	Atlantic Ocean: North Sea, Helgoland
Coordinates	Lat. (^o)	54.1841	Long. (^o)	7.9	Alt. (m)	Depth (m)	1
Location on Map

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Source Dataset Sampling Location

Location Name

Atlantic Ocean: North Sea, Helgoland

Coordinates

Lat. (^o)

54.1841

Long. (^o)

7.9

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F015169	Metagenome / Metatranscriptome	257	Y
F025991	Metagenome / Metatranscriptome	199	Y
F028500	Metagenome / Metatranscriptome	191	Y
F028789	Metagenome / Metatranscriptome	190	Y
F036682	Metagenome / Metatranscriptome	169	N
F037203	Metagenome	168	Y
F048178	Metagenome / Metatranscriptome	148	N
F063653	Metagenome / Metatranscriptome	129	N
F088515	Metagenome / Metatranscriptome	109	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0206131_1000141816	F063653	AGAAG	MLTIPDICDKLKRLDEVTILELLEINSEEIVNRFQDKIEDMADYLEEALDDN
Ga0206131_1000141818	F015169	GGAG	MEDKQYYHFKKKCSRPSVETSSEHFYVCNEDARWDDVMRQFAAFLDSCGYVGVYEKVDIMLEDYWDTGLDTGGFRA
Ga0206131_1000141828	F036682	GAGG	MTDKITKDGVACIDLNYYWRPIEEAPHGVKLQLLSMYGVASHGSLSPAIIEDGFWIGWTPLPRRRK
Ga0206131_1000141829	F028789	AGGAGG	LTETIGTSKVTLIRENEDGSADYQCNFSPEELDALVRLGILTTLQAAIEDAKRLNPEEDDDRQDN
Ga0206131_100014183	F048178	AGAAG	MRHTVGKVIQPDTLTELFKVPAGYKAEVSTLFVSNRQGNNKTVSVYWQHAHDITHKIYIITEYVLTANNYVQFSDSMVMQSGDSLQVLTEAGSLMNVMASFDLRKEQAVLAFDGE
Ga0206131_1000141833	F025991	GGAG	MRCNCCNVILSPFESTTRKVSTNDFIDICEKCLSTIDEDVKVLTREDLRSEVGTDVANYIDCFDLTKDNDE
Ga0206131_1000141834	F028500	GAGG	MMYEIQTKWSHMVVYRTTERGNALYWLEENNQEGIFVLVKVKKV
Ga0206131_1000141838	F088515	AGG	MIDQAQHHINEATRLIKRAIMTDTLLGNDQAQYVAFLDLWESLYSLDRLIKNWDEDEDAVKQNLLSEEG
Ga0206131_1000141841	F037203	AGGGGG	MQNRFETLQEALDAEEIAHMWDCSPINYNETRTLTYADGSRYGHYISIYRDERGLYERPIHYSRN

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0206131_10001418

Overview

Ecosystem & Geography

Associated Families

Sequences