Scaffold Ga0206131

Basic Information
Taxon OID	3300020185 Open in IMG/M
Scaffold ID	Ga0206131_10001240 Open in IMG/M
Source Dataset Name	Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160517_1
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300020185 Open in IMG/M

Scaffold ID

Ga0206131_10001240 Open in IMG/M

Source Dataset Name

Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160517_1

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	33217
Total Scaffold Genes	49 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	32 (65.31%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (83.33%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

33217

Total Scaffold Genes

49 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

32 (65.31%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (83.33%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Pelagic → Unclassified → Seawater → Pelagic Marine Microbial Communities From North Sea

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Pelagic → Unclassified → Seawater → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location
Location Name	Atlantic Ocean: North Sea, Helgoland
Coordinates	Lat. (^o)	54.1841	Long. (^o)	7.9	Alt. (m)	Depth (m)	1
Location on Map

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Source Dataset Sampling Location

Location Name

Atlantic Ocean: North Sea, Helgoland

Coordinates

Lat. (^o)

54.1841

Long. (^o)

7.9

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001582	Metagenome / Metatranscriptome	668	Y
F002716	Metagenome / Metatranscriptome	535	Y
F005495	Metagenome / Metatranscriptome	399	Y
F007417	Metagenome	351	Y
F008595	Metagenome / Metatranscriptome	331	Y
F036651	Metagenome / Metatranscriptome	169	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0206131_1000124011	F036651	AGGA	MDIHLNEVGTTKPLILPKRSIRGYYKDFLTGEIKVQVNDKEYSVRDSLTEIQYLMGVNT
Ga0206131_100012403	F008595	AGGAG	MSKEENKMENQEPVIITFNNVEYRASDLNEEQMALAAKLNIAGKKLARLQEYYDDYVITDEYKNLCIQSFDRAINATNEEVEVVEEE
Ga0206131_1000124036	F005495	N/A	MLKWNGGSNTPNLNMKKFLIIKDTVANGQKVNAGDIIELREDVGHELCAYGKASVHIEKPKANKEDRSVGLKTSKVKAPKTRAKK
Ga0206131_1000124037	F001582	GAG	MAIESAADFTSYLDINTGHGVTATFFEVQQSLWDDFPLIDTLFDIDSGFSKNINIIIDQEYFNIEAGTVPVAGYQPRAIVKASDVPYISQEDKLLINAITTNRGSVLKPATTFIVKTVEPDNTGFVELVLEEE
Ga0206131_1000124038	F002716	AGAAG	MSQYRLETEEDMASYLDPNSHGVAATYINNGTSTDINIILNNEYVEQEEGIGVEALEPIAYCRSIDIPSVAYGHLLNVSAIKDTDGNIIKAATNYTIVNIRPDRTGFIALELEEV
Ga0206131_100012409	F007417	AGGAG	MRYTLQVQLPSLGWVVAMKTSDLFYMASKRARLIAEGHKVKLTKESK

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0206131_10001240

Overview

Ecosystem & Geography

Associated Families

Sequences