Scaffold Ga0206131_10001208

Overview

Basic Information

• Taxon OID: 3300020185
• Scaffold ID: Ga0206131_10001208
• Source Dataset Name: Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160517_1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 33609
• Total Scaffold Genes: 43
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 35 (81.40%)
• Novel Protein Genes: 12
• Novel Protein Genes with Ribosome Binding Sites (RBS): 8 (66.67%)
• Associated Families: 12

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Pelagic → Unclassified → Seawater → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location

• Location Name: Atlantic Ocean: North Sea, Helgoland
• Coordinates
  • Lat. (^o): 54.1841
  • Long. (^o): 7.9
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001942	Metagenome / Metatranscriptome	613	Y
F002221	Metagenome	581	Y
F005495	Metagenome / Metatranscriptome	399	Y
F006845	Metagenome / Metatranscriptome	363	Y
F007417	Metagenome	351	Y
F013088	Metagenome / Metatranscriptome	274	Y
F013639	Metagenome / Metatranscriptome	269	Y
F038657	Metagenome / Metatranscriptome	165	N
F063662	Metagenome	129	N
F066238	Metagenome / Metatranscriptome	127	N
F093807	Metagenome	106	N
F104980	Metagenome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0206131_1000120810	F104980	GGGGG	MERFADTFRDDFYVWEDHIEGIDKPVLWEYKNRDKCFYQYPIYRKSDYKILIHLTKEEKKIALDFLEQLHAPLNEETRQHNNEKAKLRRLK
Ga0206131_1000120811	F063662	AGGAG	MEVIFNIVGGGQICLPKREVRGYYKDFITGDTLVQVGDSEHKVRESLTEIAYLMGVVQ
Ga0206131_1000120814	F013088	GGAG	MDEIIKKALWIPEELHKDIKIFAIQNSLTIEQASQMLIKLGMVTYSEEKANDTV
Ga0206131_1000120815	F093807	AGAAGG	MTQYKELVETQRLKLNKEKDEWYIHVNNGAGYTEVKDGDTLTITHHATGKKEIIIDAN
Ga0206131_1000120817	F006845	GAG	MRSLKRQMDLYSYLLEEDFEQYCRLAFERIQTACDFLGIINDEDYEGFKERCYTQLETDYINSIDITIH
Ga0206131_1000120818	F038657	AGGAG	MDILGGMQNSEEKPQIYFGFKTLGQQFFANGETPVEFKYLQLDIDTFKSGWGRYTKGDGFEYKWDAKFGVVDPKPADDWKRAFSCWVMPNGGNAMLWQRFTFAESSAFNKILGTFWHEKDANLGKLPVVEYKGSKPIQVGMGTSSELSFVFAKWGDRGFNVPEWYVDPDSPVSDDDGFVSPNEGLADLVNKAEEDNSDVPF
Ga0206131_1000120821	F002221	GGAG	MKTYLDESLESKLKELRIYEAESFEKWGSRKRIFKMLGVDFEIKFCRAEQMLRDAMHKGKVKEKLKMVDMMLRAFVALNKKCEESGYIMIQPSTRCFNFDKKTALVCDTDDEKPILQKIHKNEPEMMIFSVEELLRCIPEDFMKAKELLSKLDKAVNFKRIDHV
Ga0206131_1000120826	F013639	N/A	MKVDKKKLKEMIKQGKSSHDAAMSFGCSPSTARRKAKEIGLKFKGKSYWRKG
Ga0206131_1000120833	F005495	N/A	MLKWNGGSNTPNLNMKKYLITKNTVANGQRVNAGDVVELPENIGHELCAYNKAEVHVAKPKAKKEDRSVGLKTSKVKAPKTRAKK
Ga0206131_1000120834	F066238	N/A	MPMEFDRDFDGYLDATYGHGIQVTYTPTGGSSSSINVILNQEYVDIDTAGLPVQGYQPVAQSKTTDIPNIAFGDTIVAPAIKNLDGTQIKPSTTYKVINYEHDNLGMTSLLLEVQ
Ga0206131_100012087	F001942	N/A	MAKTSEDHQGNSRLGALGESLVQTFLLEYADFVYPTQDKHPADILLETNGRKYTVQVKTRRESKQGKYTFASETSRQMSELYKNYHCDILAFVFFSQEHKRIIFKPNTTSQTYFTFDKKIITPTLEIDSLQETLDALSQVPVLNPLK
Ga0206131_100012089	F007417	AGGGGG	MTRYTLEVKLPSLGWVVAIKTRDLFYMARKRARLIKQGHEVKLTKKRGK