NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0206131_10000967

Scaffold Ga0206131_10000967


Overview

Basic Information
Taxon OID3300020185 Open in IMG/M
Scaffold IDGa0206131_10000967 Open in IMG/M
Source Dataset NamePelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160517_1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)38430
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (41.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Pelagic → Unclassified → Seawater → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location
Location NameAtlantic Ocean: North Sea, Helgoland
CoordinatesLat. (o)54.1841Long. (o)7.9Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F020012Metagenome / Metatranscriptome226Y
F022889Metagenome / Metatranscriptome212Y
F023556Metagenome / Metatranscriptome209N

Sequences

Protein IDFamilyRBSSequence
Ga0206131_1000096711F020012N/AMAEELIPLNAFKSVLTTLTGDNDVVYSAPKGVSTILLSAQITNTGPINEPVTISITSNRDLPVPQVDSISNAGNFLSASALIEKNQTFLEKESAAYINFQNNLTQIPFSFTSSFFEAYVRTAVDGVEADLIGGGTLQSKKAALSYYNKNGEILIPNNYFTASYQTIDYATKLVEQILINESITGSTDVARFYQEDVTQSFDNTLIAETGSISASVNLLSAISDTISNPTRVEQLPVDLITNVTIPAGDSLSPIVAGKLVLEQQFSLIVSGSTNLTVILSILESANE
Ga0206131_100009678F023556N/AMKEVNAPDTFQGIPSDKPNGDRYEFYHPLYWVFKVENMRIKTLDSRLKDKRKPHARFDVFMYLLTDDSQGELFVRSQDYVYEQVGNDFYIKMKKENFPLVDRNGDAWSFSTDDRIFIKGDIERVN
Ga0206131_100009679F022889GAGMSRKVPKIYTGNTVKKRDRQSFKNFVLEVIKDTFINEFTPTSSSLDSSTETLFTLFLGSKDGNNDGDLLDRVDINGYRFNYEDLQVDNAYDYLDVYLYGVKQNRSKYVVKLFDGEGTELTSGQYASGSKEIRMVFNEDITRVPTEVPDNAFIIKGKIVEIQ
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