Scaffold Ga0206131

Basic Information
Taxon OID	3300020185 Open in IMG/M
Scaffold ID	Ga0206131_10000816 Open in IMG/M
Source Dataset Name	Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160517_1
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300020185 Open in IMG/M

Scaffold ID

Ga0206131_10000816 Open in IMG/M

Source Dataset Name

Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160517_1

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	42000
Total Scaffold Genes	62 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	15 (24.19%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (14.29%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

42000

Total Scaffold Genes

62 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

15 (24.19%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (14.29%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Pelagic → Unclassified → Seawater → Pelagic Marine Microbial Communities From North Sea

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Pelagic → Unclassified → Seawater → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location
Location Name	Atlantic Ocean: North Sea, Helgoland
Coordinates	Lat. (^o)	54.1841	Long. (^o)	7.9	Alt. (m)	Depth (m)	1
Location on Map

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Source Dataset Sampling Location

Location Name

Atlantic Ocean: North Sea, Helgoland

Coordinates

Lat. (^o)

54.1841

Long. (^o)

7.9

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F019909	Metagenome / Metatranscriptome	227	Y
F020259	Metagenome	225	N
F024582	Metagenome / Metatranscriptome	205	Y
F026537	Metagenome / Metatranscriptome	197	N
F036969	Metagenome / Metatranscriptome	169	N
F068220	Metagenome / Metatranscriptome	125	Y
F092864	Metagenome / Metatranscriptome	107	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0206131_1000081642	F036969	N/A	MFSTHAIRLAYGKTLMDGGSSLLTSDGYDFEVPYKGFMVGGLSGETKIPLDICDSTTFHSIWHKYSAEVRKLIKDNPSSSYAVGTWVDKGCIVFDVSEKLTDSRSAYDLCKERNEDAYYDVEASKSVFIEKDNDNAEA
Ga0206131_1000081645	F024582	N/A	MKCTHNTLTHLLGAWDRLEVVGTNPDNYKSILTNTLLPHRNEFGKRQVKIAIEYRIEEGGARNAPYIYAFLVMYDQNGHRRSVIKNGSWGCHGEDMMEFKLWFAKKLNHANEMQEQRIENAQESITDFLS
Ga0206131_1000081647	F020259	N/A	MINLKMTEQTFTAVADWAERIQMMTQENRLINSQDIVHDVFGMLRDDEHFLPRL
Ga0206131_1000081648	F019909	N/A	MTNFEQHIGHELPQEWIDYINAHTTDELYNQAKKLKFDSWCPILLENDSPELRKHLEEASELLFKYVDHIDSQLVTK
Ga0206131_1000081649	F068220	N/A	MLPNQNLNLMKLYASIHGVCGLAEGYSETTVQFFKTLEQAKEHKARVLALLTKAEHEEVITHTDGTQDIIVYDDLNSEQEILKIVEVNPLWDTDHFNPANSSTREWLMWNQMESEAMYDGEYLPTDMGCIKEATDILYGTNESMLMEPWADFVGGIYYRGEAMLDADDVCIYFFRVPKSDTL
Ga0206131_1000081650	F026537	N/A	MNKKYHMKQEIIDRLEYVEETYAGEMETWRDPVTEAYYHVPIEIVRDWDNSELLESNKQSKMTHKRKEQHIKQLAFSINHGASGYVTDNFVIEDLPTPQRTGTMTQQDTYSKHKARQIFEAFLEQNPNIND
Ga0206131_1000081657	F092864	AGG	MTNEQAIQIVLKNKDPSNAERLAAMYACDDILEMDIDVWLSKDVSEYLPQFPDIAESLVEDLLKEDSISVERVANSLTEVSRSMYHYVRFYEILSSYDMALSER

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0206131_10000816

Overview

Ecosystem & Geography

Associated Families

Sequences