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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300020185 Open in IMG/M |
| Scaffold ID | Ga0206131_10000660 Open in IMG/M |
| Source Dataset Name | Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160517_1 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 46662 |
| Total Scaffold Genes | 76 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 70 (92.11%) |
| Novel Protein Genes | 5 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 5 (100.00%) |
| Associated Families | 5 |
| Taxonomy | |
|---|---|
| Not Available | (Source: ) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Pelagic → Unclassified → Seawater → Pelagic Marine Microbial Communities From North Sea |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Atlantic Ocean: North Sea, Helgoland | |||||||
| Coordinates | Lat. (o) | 54.1841 | Long. (o) | 7.9 | Alt. (m) | Depth (m) | 1 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F006939 | Metagenome / Metatranscriptome | 361 | N |
| F012352 | Metagenome / Metatranscriptome | 281 | N |
| F045197 | Metagenome | 153 | N |
| F048361 | Metagenome / Metatranscriptome | 148 | N |
| F071405 | Metagenome / Metatranscriptome | 122 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0206131_1000066034 | F071405 | AGGA | MHPSYLGWQIDWPVFVKRPFTSDGKQWETQDHYNWLNRGIGSDAVASLYVQGFIHHNRELEKQAKVGDRLSELTGPQLDKLIGLLNAEVKANTNSNTEYTEKKVKQSKIDAKQRALLRSYLRNNRWIEDKFFEIRDGILED |
| Ga0206131_1000066036 | F012352 | AGG | MSFRPYDLLNLVNRFGEPLTLNKVTTSGTYNPANGTVTGSATTDYSFTGYFYNYDNGIAGNIDEIRRGTRKCLISASSLAVVPDDEDQITGNGDTVNVLSVVTIFSNGIAICYICDVRE |
| Ga0206131_1000066050 | F048361 | GGA | VTRGDELWVMNKNISASLMFALVVQAAMIVWAISQMRADVDANYASIVRISADVKAVETSSITQAVQLGKIEENIKGIKESLERMLEVMERD |
| Ga0206131_1000066058 | F045197 | AGAAG | MGKGIYEGEAMIYVYIVVLSIMKDGEPHFSVRAPNATYKTEERCQAVRELNMLYLLETKPDPKAKFFSQCVGLPFNMKDKGDL |
| Ga0206131_100006609 | F006939 | AGGAG | MALPMNMVANVLGENQNNFVTVKFLTKDDEVRVYNGRMNVVKGLKGNERGQIVATALKANGYVTLKTSEGYKCFKLDRVLAFKADGRHVFTMGEEIV |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |