Scaffold Ga0206131

Basic Information
Taxon OID	3300020185 Open in IMG/M
Scaffold ID	Ga0206131_10000336 Open in IMG/M
Source Dataset Name	Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160517_1
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300020185 Open in IMG/M

Scaffold ID

Ga0206131_10000336 Open in IMG/M

Source Dataset Name

Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160517_1

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	68543
Total Scaffold Genes	118 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	31 (26.27%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (16.67%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

68543

Total Scaffold Genes

118 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

31 (26.27%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (16.67%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Pelagic → Unclassified → Seawater → Pelagic Marine Microbial Communities From North Sea

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Pelagic → Unclassified → Seawater → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location
Location Name	Atlantic Ocean: North Sea, Helgoland
Coordinates	Lat. (^o)	54.1841	Long. (^o)	7.9	Alt. (m)	Depth (m)	1
Location on Map

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Source Dataset Sampling Location

Location Name

Atlantic Ocean: North Sea, Helgoland

Coordinates

Lat. (^o)

54.1841

Long. (^o)

7.9

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F007770	Metagenome	345	Y
F016956	Metagenome / Metatranscriptome	243	Y
F023615	Metagenome / Metatranscriptome	209	Y
F039679	Metagenome	163	Y
F048843	Metagenome / Metatranscriptome	147	Y
F048910	Metagenome / Metatranscriptome	147	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0206131_1000033620	F048843	GAGG	MAQKDKYFVFSVPTAYIYEIQAESEKEAREILVEHGGIEIYGDQCEMLAEDYQNAELEQTYEM
Ga0206131_1000033636	F039679	N/A	MSAKNSHLTIRGDLIAEDLSVPVRFLDYQEDCWVTDSSTLDIDGEWSTDGEQLDDVSGYNIIVRITDPSQKDKYGNPWRDRLAFAISADFNWN
Ga0206131_1000033637	F007770	N/A	MSGEGHTTSFKRTTQTTKSNKQLLEEFKGLVYSSKKVMSHMKWYGKEHSVELVEHGDEEQPKWRQEYVAIKDTFEFYISTYESWGKDSNYYECHKTEGSFVSLARKFAEDNNLMYFPDGFPAEWIEQETIDGEKKWNHFIVKPNDKNIDMICEIYYDYGMQKLQNDSKELWYNAKDKIKQLMEHKNQCEYAK
Ga0206131_1000033639	F016956	N/A	MIKTLEEWKAPKRASLAIVDLALEHIKKVEFNPEVKTEGDNFDYWNSYKLEDDTYVDYNIYCGDDWCVLKQDGSGEYEFTHPNSWSWDVACYAVDPPTKDNPHHQIDTDREQYLFSYNKDYGGRKVVFGS
Ga0206131_1000033640	F023615	N/A	MNRFELEDSMSNLHQIGEDIETIIYAIGDSPIKHTEDQLLNMLIGMKQLHDTRYQKMWDIFEQLIKEKEIS
Ga0206131_1000033684	F048910	N/A	MKINIKSLLIAFGLLTNAALAGNSAKIGYASDFFYRGDQKALESVQSAVDLETALLGLDAKLHACTNQSIDEGVDSYRFAAGLGTSVAEGLLSIYGGFNHFEDVAGEALSEVQVSLSVGVLGNPSVSAYKDTSDDLYTLEGSLSHSLDFSFANLGLRGLIGNTDVTESDSRTYYSVGSELVRQVGAGVDIGLSVDLIDADDIEREFVFGTTLAFSF

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0206131_10000336

Overview

Ecosystem & Geography

Associated Families

Sequences