Scaffold Ga0206131_10000183

Overview

Basic Information

• Taxon OID: 3300020185
• Scaffold ID: Ga0206131_10000183
• Source Dataset Name: Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160517_1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 88997
• Total Scaffold Genes: 146
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 122 (83.56%)
• Novel Protein Genes: 9
• Novel Protein Genes with Ribosome Binding Sites (RBS): 8 (88.89%)
• Associated Families: 9

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Pelagic → Unclassified → Seawater → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location

• Location Name: Atlantic Ocean: North Sea, Helgoland
• Coordinates
  • Lat. (^o): 54.1841
  • Long. (^o): 7.9
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003074	Metagenome / Metatranscriptome	509	Y
F020544	Metagenome / Metatranscriptome	223	Y
F061867	Metagenome / Metatranscriptome	131	Y
F067765	Metagenome / Metatranscriptome	125	N
F074686	Metagenome / Metatranscriptome	119	Y
F076126	Metagenome / Metatranscriptome	118	Y
F095558	Metagenome / Metatranscriptome	105	Y
F097028	Metagenome / Metatranscriptome	104	N
F099349	Metagenome / Metatranscriptome	103	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0206131_10000183109	F099349	AGGA	MKSFNKWEQEQLDEGKVTIAKLRVGTTVTPMWKGRSAKNYGISGMPVYDGKVKVLGMGIVPFGKKAEKRHIIGKDYKDVQSKYKEIWNTEEIRYGRFWNAQHRMKTFFNTIAAEDKKLKPGFVCWIWEVVDGPDKGKIHYCFIDSDDRWAIAFLNKSAEFEMIS
Ga0206131_10000183110	F076126	N/A	MPDYDKVLELIEVLKLDSDNTIKKVTLNVKTFDTTTPSVFAQQPMVAVLTSEDYANSEIVKVSTTNTAVDIALWGYEYAGGDTYYESTIKDNAERTVVDLLQFQGTSTVDITALP
Ga0206131_10000183125	F003074	AGAAGG	MTKSTEEKILQVVNLSPSESWVERIVEIHPMKQVFYASILQALVFGSMLLSFFAINQFV
Ga0206131_10000183127	F074686	AGGA	MKNDYVVVDTVSIFKQRYIIPREELKKMNEDVTFSDTHAKQWAHESVECEEVKEFSQRWLGEQVTNIDFADTEKVLRLFKDDNEELSKEWSQAKQLDFINDWKDKTPK
Ga0206131_10000183143	F067765	AGGA	MSTKNRDNLIYFPSIHSNPPIDEVSVAEKIREYKESYSTELAEIIWENVLGEMARAGCEFDEDFETYFPSMILIFEAIRSLHLQTMGEEHQLQPFAKQNVAILDSDESQVAGGLKKNLEETIDIDEDL
Ga0206131_1000018325	F097028	GGA	MDHLTVLLERALYKHQKGQLSGVDDLYKSLIGTMGESKVVNLTEGESVNGKFDVLGKTRYPGRIEVKTANKPTNGKLGAWSLREKKGHCDWVALVDASGVQDSDYRVSVIPHDVFFDYFDNRSAKSDYVTWSFTYNESDKLSPEMTNLFLKYEVPIDIIRDL
Ga0206131_1000018363	F061867	GGAGG	MAKWPKRQPWHDGVRMQFDYEDYIMSVVKFTGSYGYKKGLWEVAFMDVDTRDFVDPPLDFLSEYYNPDPGIYGSLNDPDVDRCHKSLSLISNYIGEH
Ga0206131_1000018370	F095558	AGGA	MDYKGNNVETITHSKKIMLDRAARPYDGLSEGPFKESLSKMNGVFRKEVVSYRIKDGYLYRETAIRNFTDGDYHDTVKIETLHSVE
Ga0206131_1000018394	F020544	AGG	LKAYILTHDHPISRKYAKMCSQTCDAIDLDWEYFEGWSNCTGRMAWCQTGIKMKFYEPMLHVDFPTPEHKANTCSAGHAAIWKKIAEGDDEVGIVLEHDALMYYKPDIKVPDNYLITLGYKVTDPENYRAFDARDNEPRQLININGHEGAHAYMMTKRTAQNLIYEIEQRGVMGCVDNAYFILNQRCTQIPLAIMSPTPAIGYLRDSTIWDKSAHVNYEFIETFAKYYK