Basic Information | |
---|---|
Taxon OID | 3300020183 Open in IMG/M |
Scaffold ID | Ga0194115_10092127 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Lake Tanganyika, Tanzania - TA2015002 Mahale S4 surface |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
---|---|
Scaffold Length (bps) | 1719 |
Total Scaffold Genes | 6 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 4 (66.67%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
Associated Families | 3 |
Taxonomy | |
---|---|
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes | (Source: UniRef50) |
Source Dataset Ecosystem |
---|
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Lake Tanganyika, Tanzania |
Source Dataset Sampling Location | ||||||||
---|---|---|---|---|---|---|---|---|
Location Name | Tanzania: Lake Tanganyika | |||||||
Coordinates | Lat. (o) | -6.4446 | Long. (o) | 29.9042 | Alt. (m) | Depth (m) | 0 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F045719 | Metagenome / Metatranscriptome | 152 | Y |
F078657 | Metagenome | 116 | Y |
F106068 | Metagenome | 100 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0194115_100921271 | F106068 | N/A | VSNYLNVNIPTFYAGLDSAFLYDRDPSPTNEQVPVEVFAYTSIPQRCGMFSVMTEYGSQHARVPIHYLWSL |
Ga0194115_100921272 | F045719 | GGAG | MATWYKLKSGAWGVKIKHDGKPGESVEVTNKKGETKTVWLANRAAKFDDAQLWEVSDEEPETQPATLDEEPF |
Ga0194115_100921273 | F078657 | GAG | MSENELITYQAWINDLQRDLDQTREDKKELLQRVAKLERLVAEYGNKINNLIQQRGDE |
⦗Top⦘ |