Scaffold Ga0194115_10092127

Overview

Basic Information

• Taxon OID: 3300020183
• Scaffold ID: Ga0194115_10092127
• Source Dataset Name: Freshwater microbial communities from Lake Tanganyika, Tanzania - TA2015002 Mahale S4 surface
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1719
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Lake Tanganyika, Tanzania

Source Dataset Sampling Location

• Location Name: Tanzania: Lake Tanganyika
• Coordinates
  • Lat. (^o): -6.4446
  • Long. (^o): 29.9042
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F045719	Metagenome / Metatranscriptome	152	Y
F078657	Metagenome	116	Y
F106068	Metagenome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0194115_100921271	F106068	N/A	VSNYLNVNIPTFYAGLDSAFLYDRDPSPTNEQVPVEVFAYTSIPQRCGMFSVMTEYGSQHARVPIHYLWSL
Ga0194115_100921272	F045719	GGAG	MATWYKLKSGAWGVKIKHDGKPGESVEVTNKKGETKTVWLANRAAKFDDAQLWEVSDEEPETQPATLDEEPF
Ga0194115_100921273	F078657	GAG	MSENELITYQAWINDLQRDLDQTREDKKELLQRVAKLERLVAEYGNKINNLIQQRGDE