Scaffold Ga0194115_10048773

Overview

Basic Information

• Taxon OID: 3300020183
• Scaffold ID: Ga0194115_10048773
• Source Dataset Name: Freshwater microbial communities from Lake Tanganyika, Tanzania - TA2015002 Mahale S4 surface
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2705
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (28.57%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Lake Tanganyika, Tanzania

Source Dataset Sampling Location

• Location Name: Tanzania: Lake Tanganyika
• Coordinates
  • Lat. (^o): -6.4446
  • Long. (^o): 29.9042
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000888	Metagenome / Metatranscriptome	847	Y
F001150	Metagenome	764	N
F003213	Metagenome	500	Y
F011486	Metagenome	290	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0194115_100487732	F001150	N/A	MLTKHEKSRIAVAIAESQASANARWTPQQQLDVDAAIRKIARMKPRFTADEVWHELGPTFPVTKGMTARLAHAQRQGLIKNTGEITFSKRGGVHDHAQRLTIWQSL
Ga0194115_100487735	F011486	N/A	MTRPYTISKQPVVTSPKAGMAKWVELCCKHSDGSLWNNGVWVVRDMRGKPGVVSNHARGLAVDLSYRWQAQQKRGRQDGRKVSLAYVNKLLDNADTLGIQLVIDYALNRSWKCDRGTWIAGKFNSGDWWHIEIDPRLADDPQAAKQAFQAVFGVSPTRPTQPV
Ga0194115_100487736	F003213	N/A	MRDKKINKKNRQIGDQTTKGGLIGLFIYFATTNNVDPALIALLVPIISSVLAWISTKIGDPDLACLFIPKDKK
Ga0194115_100487737	F000888	N/A	GLNMGAQYFAQIDDDNIVTDVAVVTAEFMEANPERYPGTWVETFFDIPGKTYAGIGWTYDYATQNFVAPPNPEPVEP