Scaffold Ga0194115_10045614

Overview

Basic Information

• Taxon OID: 3300020183
• Scaffold ID: Ga0194115_10045614
• Source Dataset Name: Freshwater microbial communities from Lake Tanganyika, Tanzania - TA2015002 Mahale S4 surface
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2838
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (57.14%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Lake Tanganyika, Tanzania

Source Dataset Sampling Location

• Location Name: Tanzania: Lake Tanganyika
• Coordinates
  • Lat. (^o): -6.4446
  • Long. (^o): 29.9042
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003331	Metagenome / Metatranscriptome	493	Y
F007569	Metagenome / Metatranscriptome	348	Y
F020347	Metagenome / Metatranscriptome	224	Y
F032098	Metagenome / Metatranscriptome	181	Y
F102570	Metagenome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0194115_100456141	F020347	N/A	KTYLQYVAIPALAFFFTAIISYNLTPEKTPQHTSTVVGSSGDLVCTSSCKVKDQ
Ga0194115_1004561410	F032098	GGA	MEKSKPYPYHVLDPTTPWYEWLCYCEICHQLDVKDQPSIRRYMGYRNYLKSVGVL
Ga0194115_1004561411	F102570	AGG	MMIKRFINWFFAPSVKPDLNDYNDIYQRFVDLEQRVKVLEEENIETTNELYRMENSLDARIDILAEHCRINTDV
Ga0194115_100456143	F003331	N/A	MTLTEKAQIYKNVWCCAYRRRHEAKLNKDWERYHGEHQTLLMCLKIATWTTFDTEKERYL
Ga0194115_100456146	F007569	GAGG	MNFTPEQYKLIYTAVRRYQYEKTVLNSKEYSNCSEILDELFDSVYTQRVEQPT