NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0194115_10032543

Scaffold Ga0194115_10032543


Overview

Basic Information
Taxon OID3300020183 Open in IMG/M
Scaffold IDGa0194115_10032543 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Tanganyika, Tanzania - TA2015002 Mahale S4 surface
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3639
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (44.44%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (50.00%)
Associated Families6

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Lake Tanganyika, Tanzania

Source Dataset Sampling Location
Location NameTanzania: Lake Tanganyika
CoordinatesLat. (o)-6.4446Long. (o)29.9042Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002317Metagenome / Metatranscriptome571Y
F002867Metagenome / Metatranscriptome524Y
F003661Metagenome / Metatranscriptome474Y
F003805Metagenome / Metatranscriptome467Y
F017122Metagenome / Metatranscriptome242Y
F043896Metagenome / Metatranscriptome155Y

Sequences

Protein IDFamilyRBSSequence
Ga0194115_100325432F002317N/AMDHHEEAFISDKPPNSPFNQAVPALLTAAVVGLGGLFIQVAKLDQSVSTVAADIQELKNDSKERLSDLETRVRQIEMLVGNTK
Ga0194115_100325433F002867AGGMSVVNTTDFGNGYTLDQLENERGELYYRACLNSVCRYAEDHYIAMMYLEGMGWNPKADHQ
Ga0194115_100325435F003661N/AMDPTTAAVIAIMVAAGSEVIALLPIKENSWVQLILKALKVVFPKR
Ga0194115_100325437F003805GAGGMRPIEHSTESQFHKAAQDKWLVDLFNKRDYRGLLEAALVLNTLHQLERTKSAWAIREAADNLADQFGMDRDSA
Ga0194115_100325438F043896GGAGGVQNPEIAEWARQGWGEVIVDQNRADLLEKLYFWDGRDKPEHPYHHTYTGLYQKYTQN
Ga0194115_100325439F017122N/AMEVVPFQEQQNPELRLGEGRSRTSAEKTQLFELKIWLPGQGAMRDLIRAESLQQAITFATNRYPNCKVEVPETVAKKPRLVRSKRGPKETARRNLKLVEAKRAES
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