Scaffold Ga0194115_10028577

Overview

Basic Information

• Taxon OID: 3300020183
• Scaffold ID: Ga0194115_10028577
• Source Dataset Name: Freshwater microbial communities from Lake Tanganyika, Tanzania - TA2015002 Mahale S4 surface
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4023
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (50.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Lake Tanganyika, Tanzania

Source Dataset Sampling Location

• Location Name: Tanzania: Lake Tanganyika
• Coordinates
  • Lat. (^o): -6.4446
  • Long. (^o): 29.9042
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F035650	Metagenome / Metatranscriptome	171	Y
F105034	Metagenome / Metatranscriptome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0194115_100285775	F035650	AGTAGG	MSEIEKVDKSNFMKQFESLRPDLFFPESWTDDQKEKAVDLIRPQKTRTAMFSSIPMNCEAEKCIFASTCPLLKENLAPKGKACPIEMGMVAQFTAEYLDQLEVNPDNLVEVSMVRDLVDQEVQYLRKTKLLAKEHFVQENIIGVDHDGNPIFKKELHLAVELEDKLHKRRKDLRNQLLATREAKAKVGQVQLDTAQAISDIIGKVQSIEISREKLLKQKLGTTELDDYIIDSEAVEPEKD
Ga0194115_100285776	F105034	AGG	MNNWKMYINENGDFELPNFLYKTVMDLMKQSLDMGTLLSEDQAKLRAYKEQTKKLFKNKWYEIAKALEAFSIIDPCICSTQEKEIYCDICKGARYIISSTLTPDKMREVGLFTNAGTTSEIIGKLQKSLNQILSDYP