Scaffold Ga0194115_10028528

Overview

Basic Information

• Taxon OID: 3300020183
• Scaffold ID: Ga0194115_10028528
• Source Dataset Name: Freshwater microbial communities from Lake Tanganyika, Tanzania - TA2015002 Mahale S4 surface
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4027
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Lake Tanganyika, Tanzania

Source Dataset Sampling Location

• Location Name: Tanzania: Lake Tanganyika
• Coordinates
  • Lat. (^o): -6.4446
  • Long. (^o): 29.9042
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F019766	Metagenome	227	N
F054801	Metagenome	139	N
F088307	Metagenome / Metatranscriptome	109	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0194115_1002852812	F019766	AGGA	LVDLCSTLDLEATLMTKAQKIMKSYDRKWVSMRNKNCYDRKYAIAHLIRETAHQVLPHNPSHTFTAWKQEMLQIADEIEALQ
Ga0194115_1002852815	F088307	N/A	MMMRTDQEILDNAALKVSQILRISVGEIDKTKFVYLYTLLYNMMGQGPDGKSCEEGDLNMRHWLNTHNNHLGFCPAARLTDEYSMRMIISYLESFL
Ga0194115_100285286	F054801	N/A	MTHKVRFINIKYTDIFERDQVLTVKEMIPYAWHEVFTFEEVEGEYGTIFFEDVNEVLK