Scaffold Ga0194115_10022089

Overview

Basic Information

• Taxon OID: 3300020183
• Scaffold ID: Ga0194115_10022089
• Source Dataset Name: Freshwater microbial communities from Lake Tanganyika, Tanzania - TA2015002 Mahale S4 surface
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4880
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (20.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Opitutales → Opitutaceae → unclassified Opitutaceae → Opitutaceae bacterium TSB47 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Lake Tanganyika, Tanzania

Source Dataset Sampling Location

• Location Name: Tanzania: Lake Tanganyika
• Coordinates
  • Lat. (^o): -6.4446
  • Long. (^o): 29.9042
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014726	Metagenome / Metatranscriptome	260	Y
F068593	Metagenome / Metatranscriptome	124	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0194115_1002208910	F068593	AGGA	MSPEIIDSLQKRFGSADFSRYQVVRGQKYDFCRLLAAGTNSVSFFSNPIGATDPGAGATLFKTLEQTNLVKNASFGQEYFALTQIRTYANFVCQSRQGFTTGTNFTYRGYTALTNSAMEKLQTVLSSGVLEVRFAQKLYY
Ga0194115_100220899	F014726	N/A	MGFQSESIISAASQRFGVIDYTRWQAIRWQWYSYITYPSAGSTSLTFFGQVAGQAGVTLQDTNLPKAGSFGQTHFQLKSISTDIQIADNDVDGFTRANQATLDTRALASDYIGGFVQAGVLTFSVGARPFATIVKPFQYAPPPGSPLDLENSYVNQISAAPVPAAAAAQVVGVPWVTQTKMRPNVYFTDPNILIEAEQQFTVTLDFPSGVVPVLATNVVNDSTNPLKVGVIFDGLLLRPV