Scaffold Ga0194115_10021847

Overview

Basic Information

• Taxon OID: 3300020183
• Scaffold ID: Ga0194115_10021847
• Source Dataset Name: Freshwater microbial communities from Lake Tanganyika, Tanzania - TA2015002 Mahale S4 surface
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4924
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (16.67%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Lake Tanganyika, Tanzania

Source Dataset Sampling Location

• Location Name: Tanzania: Lake Tanganyika
• Coordinates
  • Lat. (^o): -6.4446
  • Long. (^o): 29.9042
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000847	Metagenome / Metatranscriptome	861	N
F007748	Metagenome / Metatranscriptome	345	N
F009057	Metagenome / Metatranscriptome	323	Y
F011581	Metagenome / Metatranscriptome	289	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0194115_1002184711	F000847	AGG	MSWIKIKQALLTLANSHPQVNSFGTGDPLAIGTDNTINLRTPSRDRIVYPLVFADVQSATTDMGSLSLVVGVYFSDRMESIAPMGGVVSSSPTLGWQDNEDEVLSDQLQIAQDFISSLTNDPSQEWTLNTSVSLTRFVESRDDRTAGWVATLTFLIPYGHNVCEIPT
Ga0194115_100218472	F011581	N/A	MTYYQTRPAEALTNALERLMIAISNTEMEQNHVALCEYRRACDLLGYDPKMAQWNRIEAVNGSGLPNDDPHTVDYYPLLNPEE
Ga0194115_100218475	F007748	AGG	VNLIEASLVGTISAVVGGAVAWLTRGKFQADSLQVKQAQAVLAMWQTTAEAQNKELVQLRNEIVALRERIECMENTIHSLEAENATLRQA
Ga0194115_100218477	F009057	N/A	MATFRKYDFPNQATADKAMQSLQPLDNAVPLGEIDGLVCYDILFQDTPPAAFTPYIVWPAPLGVHSFLGWDEQYIKDYNEFGT