Scaffold Ga0194115_10015601

Overview

Basic Information

• Taxon OID: 3300020183
• Scaffold ID: Ga0194115_10015601
• Source Dataset Name: Freshwater microbial communities from Lake Tanganyika, Tanzania - TA2015002 Mahale S4 surface
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6378
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (22.22%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 6

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Lake Tanganyika, Tanzania

Source Dataset Sampling Location

• Location Name: Tanzania: Lake Tanganyika
• Coordinates
  • Lat. (^o): -6.4446
  • Long. (^o): 29.9042
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014593	Metagenome / Metatranscriptome	261	Y
F020142	Metagenome / Metatranscriptome	225	Y
F026002	Metagenome	199	N
F034178	Metagenome / Metatranscriptome	175	Y
F036229	Metagenome	170	Y
F056434	Metagenome / Metatranscriptome	137	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0194115_1001560114	F014593	N/A	MDPKKDFKKFFQKMFDTPVDIQGEVLTPEERTRKNFITFVDNYKKAVLRSQEVQEKFGLDLWNWEDLFAKSLEGLIYYTFDEEVAEVILWYIYEHSLAEDQEDKIVNFGDDQFIIETAEDLYDLICLVEE
Ga0194115_1001560115	F036229	N/A	MTIYCYYYVKNDPSQEKLGKILTGSRLEAAKEFAGQKQLPLKTFLSIWSVGKKKVF
Ga0194115_1001560116	F026002	N/A	MEQKFKLEFPLDLEIKYDDPEELLELASKEEFVTFMFRNAIAAIKQAIRKNKSECVIFSIQNYNVRVAIKKEHYKTFLNKAIKHYEALEEYSKCSELVNLKSRL
Ga0194115_100156012	F034178	N/A	MKEGDKVTSTQYPDRVFELVWYKEGDNTCGVQDEALRAVVKVSSLSLVTQE
Ga0194115_100156013	F020142	N/A	MRRSPKRIEIPGKKWNEKFVHEKKTWHVVHKQDGITYAVCELRPGVVGGLVKRFYI
Ga0194115_100156017	F056434	N/A	MSKVSAKARYEAFSEWHKWAQFHYKSMKKKKKARPDYMLSNEDY