Basic Information | |
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Taxon OID | 3300020183 Open in IMG/M |
Scaffold ID | Ga0194115_10013130 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Lake Tanganyika, Tanzania - TA2015002 Mahale S4 surface |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 7271 |
Total Scaffold Genes | 25 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 8 (32.00%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (33.33%) |
Associated Families | 3 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Lake Tanganyika, Tanzania |
Source Dataset Sampling Location | ||||||||
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Location Name | Tanzania: Lake Tanganyika | |||||||
Coordinates | Lat. (o) | -6.4446 | Long. (o) | 29.9042 | Alt. (m) | Depth (m) | 0 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F007359 | Metagenome / Metatranscriptome | 352 | Y |
F016115 | Metagenome / Metatranscriptome | 249 | Y |
F020860 | Metagenome / Metatranscriptome | 221 | N |
Protein ID | Family | RBS | Sequence |
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Ga0194115_1001313013 | F007359 | N/A | MQLVKQNLGAHWVIGIKGNKDEIEQFHNRVYNWGGTNGELQWMSESFAYFWITLEKLERVIFKYVMNSLSDKLGKKFIGTKGGLKQVVLNRVMNTIKSIPVENFVKTAQVQDFYSIGQVSAEKLDTDS |
Ga0194115_100131304 | F020860 | N/A | MNITKVKKLAEGGYALYAIDPKTKQETQIGYMGENLDPKGWLPEGVKIENS |
Ga0194115_100131305 | F016115 | AGGAG | LKILEESFTSKGFKFQQIKRDGDVAIYKKKLDEAENDNYHYEVIAIKKHNGYEIAGVKMPPAEMYPSDSQWGDWAFTCNSIEDANKRFDQLQEKLTNYNATAILPSGEKRGRGRPRKIA |
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